CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
VDBG_07858
(
Verticillium albo atrum
)
C2H2 ZF,Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF00172 (Zn_clus)
IPR007087
IPR001138
VDBG_07858
T158284_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_07858T0
C2H2 ZF
3
27
FTCQHAGCGRVYLRAEHLNRHAKSH
VDBG_07858T0
C2H2 ZF
33
55
FTCEQCGSKMTRRDTFRRHMALH
VDBG_07858T0
Zinc cluster
66
104
QACLPCRQAKVKCDGQKPVCSTCSARSLRCGWSSLLNRT
Links
Other
C2H2 ZF,Zinc cluster
family TFs
Other
Verticillium albo atrum
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VDBG_07858
Verticillium alfalfae
VDBG_07858
N
1.000
VDAG_05422
Verticillium dahliae
VDAG_05422
N
0.859