Gorai.012G074000 (Gossypium raimondii)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Gorai.012G074000 T163542_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CAMTA5
M06827_2.00
Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN

NACRCGBNDHNNACRCBN
Dap-seq
OMalley et al.(2016)
CAMTA5_col_a
0.828 0.828
Q2WEL1_ORYSA
M10406_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBT_01
0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G074000.1 CG-1 16 103
Gorai.012G074000.2 CG-1 1 85
Gorai.012G074000.3 CG-1 1 85

Links

Other CG-1 family TFs
Other Gossypium raimondii TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CAMTA5 Arabidopsis thaliana AT4G16150 D 0.893
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.714
AMTR_s00057p00042800 Amborella trichopoda AMTR_s00057p00042800 I 0.714
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.857
Gorai.004G075100 Gossypium raimondii Gorai.004G075100 I 0.943
Gorai.005G065700 Gossypium raimondii Gorai.005G065700 I 0.719
Gorai.008G091800 Gossypium raimondii Gorai.008G091800 I 0.936
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.859
Lus10041126.g Linum usitatissimum Lus10041126.g I 0.774
MDP0000164873 Malus domestica MDP0000164873 I 0.869
MDP0000167705 Malus domestica MDP0000167705 I 0.869
MDP0000233860 Malus domestica MDP0000233860 I 0.869
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.859
SapurV1A.0050s0650 Salix purpurea SapurV1A.0050s0650 I 0.857
Thhalv10024342m.g Eutrema salsugineum Thhalv10024342m.g I 0.893
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.857
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.821
mgf013655m Mimulus guttatus mgf013655m I 0.726
AT3G16940 Arabidopsis thaliana AT3G16940 I 0.821
Bra038040 Brassica rapa Bra038040 I 0.881
fgenesh1_pg.C_scaffold_7002321 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7002321 I 0.893
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.869
GLYMA17G03510 Glycine max GLYMA17G03510 I 0.857
GRMZM2G032336 Zea mays GRMZM2G032336 I 0.726
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.714
POPTR_0008s10730 Populus trichocarpa POPTR_0008s10730 I 0.833
Sb02g033620 Sorghum bicolor Sb02g033620 I 0.726
TCM_021327 Theobroma cacao TCM_021327 I 0.857
Traes_2AS_4C4190DEB Triticum aestivum Traes_2AS_4C4190DEB I 0.762
Cucsa.325250 Cucumis sativus Cucsa.325250 I 0.857
mgf012030m Mimulus guttatus mgf012030m I 0.881
chr4.CM0429.140.nd Lotus japonicus chr4.CM0429.140.nd I 0.869