YBX2 (Cavia porcellus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCPOG00000009543 T164492_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.985 0.985
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.985 0.985
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.985 0.985
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.985 0.985
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.803 0.803
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000008565 CSD 92 161

Links

Other CSD family TFs
Other Cavia porcellus TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI31510 Acyrthosiphon pisum ACYPI31510 I 0.000
ACYPI31512 Acyrthosiphon pisum ACYPI31512 I 0.000
ENSAMEG00000015014 Ailuropoda melanoleuca ENSAMEG00000015014 I 0.000
ANCCEY_04739 Ancylostoma ceylanicum ANCCEY_04739 I 0.000
ANCDUO_13968 Ancylostoma duodenale ANCDUO_13968 I 0.000
ACAC_0000050701 Angiostrongylus cantonensis ACAC_0000050701 I 0.000
ACOC_0000924001 Angiostrongylus costaricensis ACOC_0000924001 I 0.000
AATE000335 Anopheles atroparvus AATE000335 I 0.000
AATE018011 Anopheles atroparvus AATE018011 I 0.000
ACOM027979 Anopheles coluzzii ACOM027979 I 0.000
AFAF020264 Anopheles farauti AFAF020264 I 0.000
AFAF001557 Anopheles farauti AFAF001557 I 0.000
AMAM003778 Anopheles maculatus AMAM003778 I 0.000
AMAM009924 Anopheles maculatus AMAM009924 I 0.000
ASU_06642 Ascaris suum ASU_06642 I 0.000
ACEP14857 Atta cephalotes ACEP14857 I 0.000
ENSBTAG00000003540 Bos taurus ENSBTAG00000003540 I 0.000
BXY_0842900 Bursaphelenchus xylophilus BXY_0842900 I 0.000
CBN18838 Caenorhabditis brenneri CBN18838 I 0.000
CBN09920 Caenorhabditis brenneri CBN09920 I 0.000
CBG03854 Caenorhabditis briggsae CBG03854 I 0.000
ztf-11 Caenorhabditis elegans WBGene00009939 D 0.000
CJA03417 Caenorhabditis japonica CJA03417 I 0.000
CRE08084 Caenorhabditis remanei CRE08084 I 0.000
CapteG130298 Capitella teleta CapteG130298 I 0.000
Cmyd_10014184 Chelonia mydas Cmyd_10014184 I 0.000
YQE_11977 Dendroctonus ponderosae YQE_11977 I 0.000
DICVIV_01967 Dictyocaulus viviparus DICVIV_01967 I 0.000
nDi.2.2.2.g06992 Dirofilaria immitis nDi.2.2.2.g06992 I 0.000
CG43689 Drosophila melanogaster FBgn0263772 I 0.000
GI16394 Drosophila mojavensis FBgn0139142 I 0.000
GL14771 Drosophila persimilis FBgn0152375 I 0.000
ECANG7_03405 Echinococcus canadensis ECANG7_03405 N 0.000
HHAL001110-PA Halyomorpha halys HHAL001110-PA I 0.000
HelroG85268 Helobdella robusta HelroG85268 I 0.000
Hba_17025 Heterorhabditis bacteriophora Hba_17025 I 0.000
MYT1L Homo sapiens ENSG00000186487 I 0.000
ST18 Homo sapiens ENSG00000147488 I 0.000
HDID_0000016901 Hymenolepis diminuta HDID_0000016901 N 0.000
ISCW018799 Ixodes scapularis ISCW018799 I 0.000
ENSLACG00000008399 Latimeria chalumnae ENSLACG00000008399 I 0.000
nLs.2.1.2.g09672 Litomosoides sigmodontis nLs.2.1.2.g09672 I 0.000
LCUP002242 Lucilia cuprina LCUP002242 I 0.000
MYT1L Macaca mulatta ENSMMUG00000009310 I 0.000
Minc05804 Meloidogyne incognita Minc05804 I 0.000
NECAME_10938 Necator americanus NECAME_10938 I 0.000
NBR_0001165301 Nippostrongylus brasiliensis NBR_0001165301 I 0.000
Ocbimv22028296m.g Octopus bimaculoides Ocbimv22028296m.g N 0.000
Ocbimv22028295m.g Octopus bimaculoides Ocbimv22028295m.g I 0.000
OESDEN_24201 Oesophagostomum dentatum OESDEN_24201 I 0.000
WBGene00238210 Onchocerca volvulus WBGene00238210 I 0.000
PTRK_0001788400 Parastrongyloides trichosuri PTRK_0001788400 I 0.000
RSKR_0000214800 Rhabditophanes kr3021 RSKR_0000214800 I 0.000
Smp_168610 Schistosoma mansoni Smp_168610 N 0.000
SMU15028607 Schmidtea mediterranea SMU15028607 I 0.000
L596_g1281 Steinernema carpocapsae L596_g1281 I 0.000
L889_g28085 Steinernema feltiae L889_g28085 I 0.000
L893_g1446 Steinernema glaseri L893_g1446 I 0.000
SPAL_0000892700 Strongyloides papillosus SPAL_0000892700 I 0.000
SPAL_0000489100 Strongyloides papillosus SPAL_0000489100 I 0.000
SSTP_0000574400 Strongyloides stercoralis SSTP_0000574400 I 0.000
SVE_1952800 Strongyloides venezuelensis SVE_1952800 I 0.000
SVE_1935100 Strongyloides venezuelensis SVE_1935100 I 0.000
SMUV_0000666101 Syphacia muris SMUV_0000666101 I 0.000
ENSTGUG00000014218 Taeniopygia guttata ENSTGUG00000014218 I 0.000
TELCIR_22038 Teladorsagia circumcincta TELCIR_22038 I 0.000
TELCIR_26151 Teladorsagia circumcincta TELCIR_26151 I 0.000