YBX3 (Taeniopygia guttata)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTGUG00000012047 T164811_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
1.000 1.000
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
1.000 1.000
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
1.000 1.000
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.818 0.818
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000012410 CSD 4 73

Links

Other CSD family TFs
Other Taeniopygia guttata TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29738.m001041 Ricinus communis 29738.m001041 I 0.000
30167.m000856 Ricinus communis 30167.m000856 I 0.000
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.000
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.000
TCP1 Arabidopsis thaliana AT1G67260 D 0.000
BRC2 Arabidopsis thaliana AT1G68800 I 0.000
Bo2g055640 Brassica oleracea Bo2g055640 I 0.000
Bo2g061250 Brassica oleracea Bo2g061250 I 0.000
Bo6g099040 Brassica oleracea Bo6g099040 I 0.000
Bo6g103670 Brassica oleracea Bo6g103670 I 0.000
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.000
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.000
Bra004097 Brassica rapa Bra004097 I 0.000
Bra004212 Brassica rapa Bra004212 I 0.000
Bra034010 Brassica rapa Bra034010 I 0.000
Bra038350 Brassica rapa Bra038350 I 0.000
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.000
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.000
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.000
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.000
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.000
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.000
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.000
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.000
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.000
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.000
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.000
Cla002355 Citrullus lanatus Cla002355 I 0.000
Cla007227 Citrullus lanatus Cla007227 I 0.000
Cla016709 Citrullus lanatus Cla016709 I 0.000
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.000
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.000
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.000
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.000
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.000
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.000
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.000
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.000
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.000
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.000
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.000
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.000
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.000
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.000
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.000
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.000
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.000
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.000
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.000
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.000
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.000
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.000
MDP0000173048 Malus domestica MDP0000173048 I 0.000
MDP0000272980 Malus domestica MDP0000272980 I 0.000
mgf019480m Mimulus guttatus mgf019480m I 0.000
mgf022233m Mimulus guttatus mgf022233m I 0.000
mgf026636m Mimulus guttatus mgf026636m I 0.000
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.000
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.000
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.000
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.000
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.000
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.000
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.000
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.000
PK12240.1 Cannabis sativa PK12240.1 D 0.000
PK19717.1 Cannabis sativa PK19717.1 D 0.000
Pm015499 Prunus mume Pm015499 I 0.000
Pm029002 Prunus mume Pm029002 I 0.000
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.000
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.000
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.000
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.000
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.000
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.000
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.000
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.000
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.000
TCM_011874 Theobroma cacao TCM_011874 I 0.000
TCM_019518 Theobroma cacao TCM_019518 I 0.000
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.000
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.000
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.000