CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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onecut2
(
Danio rerio
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSDARG00000090387
T167019_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain and retina. Orthologous to human ONECUT2 (one cut homeobox 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ONECUT2
M02942_2.00
Homo sapiens
DDTATYGATTTTYN
NRAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT2_1
0.978
0.978
ONECUT2
M03714_2.00
Homo sapiens
NDDTATCGATYBNN
NNVRATCGATAHHN
SELEX
Nitta et al.(2015)
ONECUT2_1
0.978
0.978
ONECUT2
M04667_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT2_eDBD_HT-SELEX
0.978
0.978
ONECUT2
M04669_2.00
Homo sapiens
NNSGATCGATAH
DTATCGATCSNN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_1
0.978
0.978
ONECUT2
M04670_2.00
Homo sapiens
NKATYGATYDN
NHRATCRATMN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_2
0.978
0.978
ONECUT2
M10417_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OC2_Q3
0.978
0.978
ONECUT2
M04668_2.00
Homo sapiens
DTATTGATYN
NRATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_eDBD_Methyl-HT-SELEX
0.978
0.978
ONECUT2
M04671_2.00
Homo sapiens
ACSGATCAATAM
KTATTGATCSGT
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_1
0.978
0.978
ONECUT2
M04672_2.00
Homo sapiens
DTATTGATTDN
NHAATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_2
0.978
0.978
ONECUT1
M02943_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_1
0.948
0.948
ONECUT1
M02944_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_2
0.948
0.948
ONECUT1
M03715_2.00
Homo sapiens
HRATCGATAHH
DDTATCGATYD
SELEX
Nitta et al.(2015)
ONECUT1_1
0.948
0.948
ONECUT1
M04673_2.00
Homo sapiens
NNATCGATYN
NRATCGATNN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_HT-SELEX
0.948
0.948
ONECUT1
M04675_2.00
Homo sapiens
NNCGATCGATAN
NTATCGATCGNN
SELEX
Yin et al.(2017)
ONECUT1_FL_HT-SELEX
0.948
0.948
ONECUT1
M09022_2.00
Homo sapiens
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_HUMAN.H11MO.0.B
0.948
0.948
Onecut1
M09026_2.00
Mus musculus
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_MOUSE.H11MO.0.A
0.948
0.948
Onecut1
M09520_2.00
Mus musculus
NRATCRATMN
NKATYGATYN
Misc
Heinz et al.(2010)
Liver-Hnf6_ERP000394
0.948
0.948
ONECUT1
M10418_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q4
0.948
0.948
ONECUT1
M10419_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q6_01
0.948
0.948
ONECUT1
M04674_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_Methyl-HT-SELEX
0.948
0.948
ONECUT1
M04676_2.00
Homo sapiens
RYSRATCAATAM
KTATTGATYSRY
SELEX
Yin et al.(2017)
ONECUT1_FL_Methyl-HT-SELEX
0.948
0.948
ONECUT3
M02945_2.00
Homo sapiens
DWTATYGATTTTYN
NRAAAATCRATAWH
SELEX
Jolma et al.(2013)
ONECUT3_1
0.940
0.940
ONECUT3
M04677_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_HT-SELEX
0.940
0.940
ONECUT3
M04678_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_Methyl-HT-SELEX
0.940
0.940
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.888
0.888
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.888
0.888
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.888
0.888
ceh-48
M01905_2.00
Caenorhabditis elegans
NNATYGRNN
NNYCRATNN
PBM
Weirauch et al.(2014)
pTH8982
0.821
0.821
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000107836
CUT
269
347
QLEEINTKEVAQRITAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR
ENSDARP00000107836
Homeodomain
403
457
KKSRLVFTDLQRRTLLAIFKENKRPSKEMQMTISQQLGLELSTVSNFFMNARRRS
ENSDARP00000126061
CUT
286
364
QLEEINTKEVAQRITAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR
ENSDARP00000126061
Homeodomain
384
438
KKSRLVFTDLQRRTLLAIFKENKRPSKEMQMTISQQLGLELSTVSNFFMNARRRS
Links
Other
CUT,Homeodomain
family TFs
Other
Danio rerio
TFs
280 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy