CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Onecut1
(
Mus musculus
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSMUSG00000043013
T167158_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Onecut1
M09026_2.00
Mus musculus
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_MOUSE.H11MO.0.A
(Direct)
(Direct)
Onecut1
M09520_2.00
Mus musculus
NRATCRATMN
NKATYGATYN
Misc
Heinz et al.(2010)
Liver-Hnf6_ERP000394
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ONECUT1
M02943_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_1
1.000
1.000
ONECUT1
M02944_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_2
1.000
1.000
ONECUT1
M03715_2.00
Homo sapiens
HRATCGATAHH
DDTATCGATYD
SELEX
Nitta et al.(2015)
ONECUT1_1
1.000
1.000
ONECUT1
M04673_2.00
Homo sapiens
NNATCGATYN
NRATCGATNN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_HT-SELEX
1.000
1.000
ONECUT1
M04675_2.00
Homo sapiens
NNCGATCGATAN
NTATCGATCGNN
SELEX
Yin et al.(2017)
ONECUT1_FL_HT-SELEX
1.000
1.000
ONECUT1
M09022_2.00
Homo sapiens
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_HUMAN.H11MO.0.B
1.000
1.000
ONECUT1
M10418_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q4
1.000
1.000
ONECUT1
M10419_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q6_01
1.000
1.000
ONECUT1
M04674_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_Methyl-HT-SELEX
1.000
1.000
ONECUT1
M04676_2.00
Homo sapiens
RYSRATCAATAM
KTATTGATYSRY
SELEX
Yin et al.(2017)
ONECUT1_FL_Methyl-HT-SELEX
1.000
1.000
ONECUT2
M02942_2.00
Homo sapiens
DDTATYGATTTTYN
NRAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT2_1
0.948
0.948
ONECUT2
M03714_2.00
Homo sapiens
NDDTATCGATYBNN
NNVRATCGATAHHN
SELEX
Nitta et al.(2015)
ONECUT2_1
0.948
0.948
ONECUT2
M04667_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT2_eDBD_HT-SELEX
0.948
0.948
ONECUT2
M04669_2.00
Homo sapiens
NNSGATCGATAH
DTATCGATCSNN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_1
0.948
0.948
ONECUT2
M04670_2.00
Homo sapiens
NKATYGATYDN
NHRATCRATMN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_2
0.948
0.948
ONECUT2
M10417_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OC2_Q3
0.948
0.948
ONECUT2
M04668_2.00
Homo sapiens
DTATTGATYN
NRATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_eDBD_Methyl-HT-SELEX
0.948
0.948
ONECUT2
M04671_2.00
Homo sapiens
ACSGATCAATAM
KTATTGATCSGT
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_1
0.948
0.948
ONECUT2
M04672_2.00
Homo sapiens
DTATTGATTDN
NHAATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_2
0.948
0.948
ONECUT3
M02945_2.00
Homo sapiens
DWTATYGATTTTYN
NRAAAATCRATAWH
SELEX
Jolma et al.(2013)
ONECUT3_1
0.918
0.918
ONECUT3
M04677_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_HT-SELEX
0.918
0.918
ONECUT3
M04678_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_Methyl-HT-SELEX
0.918
0.918
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.881
0.881
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.881
0.881
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.881
0.881
ceh-48
M01905_2.00
Caenorhabditis elegans
NNATYGRNN
NNYCRATNN
PBM
Weirauch et al.(2014)
pTH8982
0.813
0.813
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000058020
CUT
288
366
QMEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR
ENSMUSP00000058020
Homeodomain
386
440
KKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRS
Links
Other
CUT,Homeodomain
family TFs
Other
Mus musculus
TFs
278 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI008613
Acyrthosiphon pisum
ACYPI008613
I
0.000
AAEL008337
Aedes aegypti
AAEL008337
I
0.000
TBX20
Anolis carolinensis
ENSACAG00000007473
I
0.000
AALB000416
Anopheles albimanus
AALB000416
I
0.000
AARA011014
Anopheles arabiensis
AARA011014
I
0.000
AATE013317
Anopheles atroparvus
AATE013317
I
0.000
ACOM023916
Anopheles coluzzii
ACOM023916
I
0.000
ACUA008697
Anopheles culicifacies
ACUA008697
I
0.000
ADAC004417
Anopheles darlingi
ADAC004417
I
0.000
ADIR010890
Anopheles dirus
ADIR010890
I
0.000
AEPI001842
Anopheles epiroticus
AEPI001842
I
0.000
AFAF008895
Anopheles farauti
AFAF008895
I
0.000
AFUN010568
Anopheles funestus
AFUN010568
I
0.000
AGAP008567
Anopheles gambiae
AGAP008567
I
0.000
AGAP008569
Anopheles gambiae
AGAP008569
I
0.000
AGAP008563
Anopheles gambiae
AGAP008563
I
0.000
AMAM010638
Anopheles maculatus
AMAM010638
I
0.000
AMEC014683
Anopheles melas
AMEC014683
I
0.000
AMEC012505
Anopheles melas
AMEC012505
I
0.000
AMEM005379
Anopheles merus
AMEM005379
I
0.000
AMIN000992
Anopheles minimus
AMIN000992
I
0.000
AQUA000256
Anopheles quadriannulatus
AQUA000256
I
0.000
ASTEI05184
Anopheles stephensi
ASTEI05184
I
0.000
ASTEI05186
Anopheles stephensi
ASTEI05186
I
0.000
GB45715
Apis mellifera
GB45715
I
0.000
ENSAMXG00000002328
Astyanax mexicanus
ENSAMXG00000002328
I
0.000
ENSP00000386170-D1
Bos grunniens
ENSP00000386170-D1
I
0.000
TBX20
Bos taurus
ENSBTAG00000017541
I
0.000
e_gw.90.81.1
Branchiostoma floridae
e_gw.90.81.1
I
0.000
CJA32610
Caenorhabditis japonica
CJA32610
I
0.000
TBX20
Callithrix jacchus
ENSCJAG00000012232
I
0.000
TBX20
Canis familiaris
ENSCAFG00000028536
I
0.000
TBX20
Cavia porcellus
ENSCPOG00000015229
I
0.000
Cmyd_10006683
Chelonia mydas
Cmyd_10006683
I
0.000
ENSCSAG00000014936
Chlorocebus sabaeus
ENSCSAG00000014936
I
0.000
tbx20
Ciona intestinalis
ENSCING00000005267
I
0.000
csin100383
Clonorchis sinensis
csin100383
I
0.000
CGI_10020437
Crassostrea gigas
CGI_10020437
I
0.000
tbx20
Danio rerio
ENSDARG00000005150
I
0.000
DAPPUDRAFT_59354
Daphnia pulex
DAPPUDRAFT_59354
I
0.000
DAPPUDRAFT_59366
Daphnia pulex
DAPPUDRAFT_59366
I
0.000
TBX20
Dasypus novemcinctus
ENSDNOG00000004142
I
0.000
GF14392
Drosophila ananassae
FBgn0091419
I
0.000
GF24374
Drosophila ananassae
FBgn0101368
I
0.000
GF14390
Drosophila ananassae
FBgn0091417
I
0.000
GG25073
Drosophila erecta
FBgn0117202
I
0.000
GG14368
Drosophila erecta
FBgn0106627
I
0.000
GG25071
Drosophila erecta
FBgn0117200
I
0.000
GH16540
Drosophila grimshawi
FBgn0124011
I
0.000
Doc3
Drosophila melanogaster
FBgn0035954
D
0.000
mid
Drosophila melanogaster
FBgn0261963
D
0.000
H15
Drosophila melanogaster
FBgn0016660
I
0.000
GI17985
Drosophila mojavensis
FBgn0140725
I
0.000
GI17986
Drosophila mojavensis
FBgn0140726
I
0.000
GL15033
Drosophila persimilis
FBgn0152637
I
0.000
GL25841
Drosophila persimilis
FBgn0163425
I
0.000
GA19742
Drosophila pseudoobscura
FBgn0079738
I
0.000
GA25466
Drosophila pseudoobscura
FBgn0246844
I
0.000
GA18655
Drosophila pseudoobscura
FBgn0078655
I
0.000
GM18547
Drosophila sechellia
FBgn0173454
I
0.000
GM25112
Drosophila sechellia
FBgn0179973
I
0.000
GM18548
Drosophila sechellia
FBgn0173455
I
0.000
GD14148
Drosophila simulans
FBgn0185836
I
0.000
GD23340
Drosophila simulans
FBgn0194726
I
0.000
GD23341
Drosophila simulans
FBgn0194727
I
0.000
GJ19568
Drosophila virilis
FBgn0206710
I
0.000
GJ19565
Drosophila virilis
FBgn0206707
I
0.000
GK15086
Drosophila willistoni
FBgn0217091
I
0.000
GK15084
Drosophila willistoni
FBgn0217089
I
0.000
GK12352
Drosophila willistoni
FBgn0214362
I
0.000
GE25417
Drosophila yakuba
FBgn0242487
I
0.000
GE20799
Drosophila yakuba
FBgn0238093
I
0.000
GE25406
Drosophila yakuba
FBgn0242479
I
0.000
EmuJ_000377200
Echinococcus multilocularis
EmuJ_000377200
I
0.000
TBX20
Echinops telfairi
ENSETEG00000012771
I
0.000
TBX20
Equus caballus
ENSECAG00000018182
I
0.000
TBX20
Erinaceus europaeus
ENSEEUG00000010135
I
0.000
D915_09218
Fasciola hepatica
D915_09218
I
0.000
TBX20
Felis catus
ENSFCAG00000013004
I
0.000
ENSFALG00000002727
Ficedula albicollis
ENSFALG00000002727
I
0.000
ENSGMOG00000012734
Gadus morhua
ENSGMOG00000012734
I
0.000
ENSGALG00000012151
Gallus gallus
ENSGALG00000012151
I
0.000
tbx20
Gasterosteus aculeatus
ENSGACG00000012706
I
0.000
TBX20
Gorilla gorilla
ENSGGOG00000026618
I
0.000
HCOI01255700
Haemonchus contortus
HCOI01255700
I
0.000
HMEL012426
Heliconius melpomene
HMEL012426
I
0.000
HelroG134299
Helobdella robusta
HelroG134299
I
0.000
HelroG98030
Helobdella robusta
HelroG98030
I
0.000
TBX20
Homo sapiens
ENSG00000164532
D
0.000
HDID_0000627201
Hymenolepis diminuta
HDID_0000627201
I
0.000
HmN_000695600
Hymenolepis microstoma
HmN_000695600
I
0.000
HNAJ_0000047101
Hymenolepis nana
HNAJ_0000047101
I
0.000
ENSLACG00000010741
Latimeria chalumnae
ENSLACG00000010741
I
0.000
ENSLOCG00000002483
Lepisosteus oculatus
ENSLOCG00000002483
I
0.000
LotgiG129083
Lottia gigantea
LotgiG129083
I
0.000
LotgiG179359
Lottia gigantea
LotgiG179359
I
0.000
TBX20
Loxodonta africana
ENSLAFG00000012790
I
0.000
LCUP000433
Lucilia cuprina
LCUP000433
I
0.000
ENSP00000386170
Macaca fascicularis
ENSP00000386170
I
0.000
TBX20
Macaca mulatta
ENSMMUG00000012549
I
0.000
TBX20
Meleagris gallopavo
ENSMGAG00000012040
I
0.000
MCOS_0000012101
Mesocestoides corti
MCOS_0000012101
I
0.000
TBX20
Monodelphis domestica
ENSMODG00000000085
I
0.000
MDOA009961
Musca domestica
MDOA009961
I
0.000
MDOA010319
Musca domestica
MDOA010319
I
0.000
ENSMPUG00000007865
Mustela putorius furo
ENSMPUG00000007865
I
0.000
Tbx20
Mus musculus
ENSMUSG00000031965
D
0.000
Myotis_brandtii_Tbx20_10020109
Myotis brandtii
Myotis_brandtii_Tbx20_10020109
I
0.000
TBX20
Myotis lucifugus
ENSMLUG00000015517
I
0.000
NV17866
Nasonia vitripennis
NV17866
I
0.000
NV17864
Nasonia vitripennis
NV17864
I
0.000
NEMVEDRAFT_v1g117456
Nematostella vectensis
NEMVEDRAFT_v1g117456
I
0.000
NEMVEDRAFT_v1g117393
Nematostella vectensis
NEMVEDRAFT_v1g117393
I
0.000
NEMVEDRAFT_v1g106123
Nematostella vectensis
NEMVEDRAFT_v1g106123
I
0.000
ENSNLEG00000001606
Nomascus leucogenys
ENSNLEG00000001606
I
0.000
TBX20
Ochotona princeps
ENSOPRG00000013626
I
0.000
Ocbimv22004458m.g
Octopus bimaculoides
Ocbimv22004458m.g
I
0.000
Ogr18070
Ophisaurus gracilis
Ogr18070
I
0.000
T265_12717
Opisthorchis viverrini
T265_12717
I
0.000
ENSONIG00000006593
Oreochromis niloticus
ENSONIG00000006593
I
0.000
ENSOANG00000006968
Ornithorhynchus anatinus
ENSOANG00000006968
I
0.000
TBX20
Oryctolagus cuniculus
ENSOCUG00000007422
I
0.000
TBX20
Otolemur garnettii
ENSOGAG00000010338
I
0.000
ENSOARG00000005153
Ovis aries
ENSOARG00000005153
I
0.000
TBX20
Pan troglodytes
ENSPTRG00000019076
I
0.000
ENSPANG00000007074
Papio anubis
ENSPANG00000007074
I
0.000
PTRK_0000394000
Parastrongyloides trichosuri
PTRK_0000394000
N
0.000
ENSPSIG00000016149
Pelodiscus sinensis
ENSPSIG00000016149
I
0.000
ENSPFOG00000012859
Poecilia formosa
ENSPFOG00000012859
I
0.000
Pvit_04171
Pogona vitticeps
Pvit_04171
I
0.000
ENSPPYG00000017641
Pongo abelii
ENSPPYG00000017641
I
0.000
Tbx20
Rattus norvegicus
ENSRNOG00000016181
I
0.000
Sakowv30012255m.g
Saccoglossus kowalevskii
Sakowv30012255m.g
I
0.000
Sakowv30029504m.g
Saccoglossus kowalevskii
Sakowv30029504m.g
I
0.000
ENSSHAG00000016356
Sarcophilus harrisii
ENSSHAG00000016356
I
0.000
Sjc_0040480
Schistosoma japonicum
Sjc_0040480
I
0.000
Smp_003900
Schistosoma mansoni
Smp_003900
I
0.000
SMU15033270
Schmidtea mediterranea
SMU15033270
I
0.000
L898_g31228
Steinernema monticolum
L898_g31228
N
0.000
SMAR008438
Strigamia maritima
SMAR008438
I
0.000
SMAR015389
Strigamia maritima
SMAR015389
I
0.000
XP_001195863
Strongylocentrotus purpuratus
XP_001195863
D
0.000
SPAL_0000556200
Strongyloides papillosus
SPAL_0000556200
N
0.000
SSTP_0001033100
Strongyloides stercoralis
SSTP_0001033100
N
0.000
TBX20
Sus scrofa
ENSSSCG00000016662
I
0.000
TASK_0000456901
Taenia asiatica
TASK_0000456901
I
0.000
TBX20
Taeniopygia guttata
ENSTGUG00000005375
I
0.000
tbx20
Takifugu rubripes
ENSTRUG00000005667
I
0.000
tetur32g01390
Tetranychus urticae
tetur32g01390
I
0.000
tetur32g01430
Tetranychus urticae
tetur32g01430
I
0.000
tbx20
Tetraodon nigroviridis
ENSTNIG00000005154
I
0.000
TC014296
Tribolium castaneum
TC014296
I
0.000
TMUE_s0080002600
Trichuris muris
TMUE_s0080002600
I
0.000
TTRE_0000323501
Trichuris trichiura
TTRE_0000323501
I
0.000
TBX20
Tursiops truncatus
ENSTTRG00000016622
I
0.000
tbx20.L
Xenopus laevis
XB-GENE-865696
I
0.000
tbx20
Xenopus tropicalis
XB-GENE-487334
I
0.000
ENSXMAG00000004704
Xiphophorus maculatus
ENSXMAG00000004704
I
0.000
L798_07505
Zootermopsis nevadensis
L798_07505
I
0.000