CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002943288
(
Xenopus tropicalis
)
CxxC,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02008 (zf-CXXC)
PF01429 (MBD)
IPR002857
IPR001739
XP_002943288
T167710_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002943288
MBD
1
75
MSEGWEEWPLLGPGWKRRIAVRKSGVSCGHTDTYYKSPTGEKIRSRIELAKYFNALGSSVDLTLFDFRNGVIVDK
XP_002943288
CxxC
155
201
QKLHKNTGCGTCEACKVTENCGHCTVCLLRSHNPEFSSSWKCVRRRC
XP_002943288
CxxC
203
249
RNLRKGDDCGMCQGCQRDDDCEGCSVCLDKMHKPDADIKERCLLRRC
XP_002943288
CxxC
296
343
SGRRQNRKCGDCESCLQKDDCGECDFCQDKPKFGGRNLKRQKCRWRQC
Links
Other
CxxC,MBD
family TFs
Other
Xenopus tropicalis
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mbd1
Xenopus tropicalis
XB-GENE-920305
N
0.995
mbd1.L
Xenopus laevis
XB-GENE-6077786
N
0.806