maker-pag1_scaffold_107-snap-gene-0.23 (Pythium aphanidermatum)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 maker-pag1_scaffold_107-snap-gene-0.23 T173246_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
E2FC
M06870_2.00
Arabidopsis thaliana
AWDDDGGCGCCAAAR

YTTTGGCGCCHHHWT
Dap-seq
OMalley et al.(2016)
E2FC_col_a
0.785 0.785
e_gw1.38.2.1
M01968_2.00
Physcomitrella patens
NSGCGCBHHN

NDDVGCGCSN
PBM
Weirauch et al.(2014)
pTH5707
0.754 0.754
estExt_gwp_gw1.C_220046
M01225_2.00
Physcomitrella patens
VGCGCBHHNN

NNDDVGCGCB
PBM
Lambert et al.(2019)
pTH9809
0.754 0.754
E2FA
M06871_2.00
Arabidopsis thaliana
NDDDGGCGCCAWWW

WWWTGGCGCCHHHN
Dap-seq
OMalley et al.(2016)
E2FA_col_a
0.738 0.738
E2FA
M06872_2.00
Arabidopsis thaliana
DDWDGGCGCCAWAD

HTWTGGCGCCHWHH
Dap-seq
OMalley et al.(2016)
E2FA_colamp_a
0.738 0.738
E2FA
M08106_2.00
Arabidopsis thaliana
NVGCGCCAHN

NDTGGCGCBN
ChIP-seq
Mathelier et al.(2014)
MA1414.1
0.738 0.738
ENSACAG00000013716
M01960_2.00
Anolis carolinensis
HNVGCGCBND

HNVGCGCBND
PBM
Weirauch et al.(2014)
pTH9221
0.723 0.723
E2f2
M00154_2.00
Mus musculus
NDNNGCGSBN

NVSCGCNNHN
PBM
Badis et al.(2009)
E2F2_1022
0.708 0.708
E2F3
M01964_2.00
Taeniopygia guttata
NNSGCGCGMN

NKCGCGCSNN
PBM
Weirauch et al.(2014)
pTH9288
0.708 0.708
E2f2
M09039_2.00
Mus musculus
GGCGCGMAWC

GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B
0.708 0.708
E2F2
M01961_2.00
Homo sapiens
DNSGCGCSNH

DNSGCGCSNH
PBM
Weirauch et al.(2014)
pTH9195
0.692 0.692
E2f3
M00153_2.00
Mus musculus
NNNNGCGSNN

NNSCGCNNNN
PBM
Badis et al.(2009)
E2F3_3752
0.692 0.692
ENSOANG00000014967
M01962_2.00
Ornithorhynchus anatinus
NDSGCGCSHN

NDSGCGCSHN
PBM
Weirauch et al.(2014)
pTH9382
0.692 0.692
E2F2
M02949_2.00
Homo sapiens
AAAAATGGCGCCAAAAWD

HWTTTTGGCGCCATTTTT
SELEX
Jolma et al.(2013)
E2F2_1
0.692 0.692
E2F2
M02950_2.00
Homo sapiens
VDTTTTGGCGCCAAAAHN

NDTTTTGGCGCCAAAAHB
SELEX
Jolma et al.(2013)
E2F2_2
0.692 0.692
E2F2
M02951_2.00
Homo sapiens
AAAWWGGCGCCAWTTT

AAAWTGGCGCCWWTTT
SELEX
Jolma et al.(2013)
E2F2_3
0.692 0.692
E2F3
M02956_2.00
Homo sapiens
RAAAAKGGCGCCAAAANN

NNTTTTGGCGCCMTTTTY
SELEX
Jolma et al.(2013)
E2F3_1
0.692 0.692
E2F3
M02957_2.00
Homo sapiens
DAAAADGGCGCCMWWTTY

RAAWWKGGCGCCHTTTTH
SELEX
Jolma et al.(2013)
E2F3_2
0.692 0.692
E2F3
M02958_2.00
Homo sapiens
NDTTTTGGCGCCAAAABH

DVTTTTGGCGCCAAAAHN
SELEX
Jolma et al.(2013)
E2F3_3
0.692 0.692
E2F4
M02961_2.00
Homo sapiens
AATGGCGCCAAA

TTTGGCGCCATT
SELEX
Jolma et al.(2013)
E2F4_1
0.692 0.692
E2F4
M02962_2.00
Homo sapiens
TTTGGCGCCAAA

TTTGGCGCCAAA
SELEX
Jolma et al.(2013)
E2F4_2
0.692 0.692
E2F3
M04701_2.00
Homo sapiens
DWTTTGGCGCCAAAWH

DWTTTGGCGCCAAAWH
SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX
0.692 0.692
E2F4
M04707_2.00
Homo sapiens
NWWKGGCGCCAAAW

WTTTGGCGCCMWWN
SELEX
Yin et al.(2017)
E2F4_eDBD_HT-SELEX
0.692 0.692
E2F2
M04696_2.00
Homo sapiens
GCGCGCGCSYW

WRSGCGCGCGC
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_1
0.692 0.692
E2F2
M04697_2.00
Homo sapiens
NDWWDGGCGCCWWHWN

NWDWWGGCGCCHWWHN
SELEX
Yin et al.(2017)
E2F2_eDBD_HT-SELEX_2
0.692 0.692
efl-1
M08110_2.00
Caenorhabditis elegans
HNHNSGCGSSAAWWN

NWWTTSSCGCSNDND
ChIP-seq
Mathelier et al.(2014)
MA0541.1
0.692 0.692
E2F4
M08109_2.00
Homo sapiens
NSGCGGGARVN

NBYTCCCGCSN
ChIP-seq
Mathelier et al.(2014)
MA0470.1
0.692 0.692
E2F4
M07942_2.00
Homo sapiens
SGCGSGARDNNBNVN

NBNVNNHYTCSCGCS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F4_UCD
0.692 0.692
E2F4
M07943_2.00
Homo sapiens
SGCGGGARDNNBVVN

NBBVNNHYTCCCGCS
ChIP-seq
Gerstein et al.(2012)
K562b_E2F4_UCD
0.692 0.692
efl-1
M08197_2.00
Caenorhabditis elegans
BGCGSSAAWW

WWTTSSCGCV
ChIP-seq
Contrino et al.(2012)
Mw140
0.692 0.692
E2F2
M09029_2.00
Homo sapiens
GGCGCGMAWC

GWTKCGCGCC
Misc
Kulakovskiy et al.(2013)
E2F2_HUMAN.H11MO.0.B
0.692 0.692
E2F3
M09031_2.00
Homo sapiens
NDGGCGGGAAR

YTTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A
0.692 0.692
E2F4
M09036_2.00
Homo sapiens
VDRGGCGGGRVND

HNBYCCCGCCYHB
Misc
Kulakovskiy et al.(2013)
E2F4_HUMAN.H11MO.0.A
0.692 0.692
E2f3
M09038_2.00
Mus musculus
DSGCGGGARV

BYTCCCGCSH
Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A
0.692 0.692
E2f4
M09037_2.00
Mus musculus
NRDDGGCGGGRMNN

NNKYCCCGCCHHYN
Misc
Kulakovskiy et al.(2013)
E2F4_MOUSE.H11MO.0.A
0.692 0.692
efl-1
M09526_2.00
Caenorhabditis elegans
WGCAARYGCGCTCYA

TRGAGCGCRYTTGCW
Misc
Heinz et al.(2010)
cElegans-L1-EFL1_modEncode
0.692 0.692
E2F4
M09524_2.00
Homo sapiens
VGCGSGAADH

DHTTCSCGCB
Misc
Heinz et al.(2010)
K562-E2F4_GSE31477
0.692 0.692
E2F3
M10454_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6_01
0.692 0.692
E2F3
M10455_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F3_Q6
0.692 0.692
E2F4
M10457_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_05
0.692 0.692
E2F4
M10458_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q3
0.692 0.692
E2F4
M10459_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F4_Q6
0.692 0.692
E2F3
M04702_2.00
Homo sapiens
DTTTTGGCGCCAAAAH

DTTTTGGCGCCAAAAH
SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX
0.692 0.692
E2F2
M04698_2.00
Homo sapiens
SGBGSGCGCGS

SCGCGCSCVCS
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_1
0.692 0.692
E2F2
M04699_2.00
Homo sapiens
DWWWDGGCGCCAAAWH

DWTTTGGCGCCHWWWH
SELEX
Yin et al.(2017)
E2F2_eDBD_Methyl-HT-SELEX_2
0.692 0.692
E2F2
M01963_2.00
Tupaia belangeri
WDVGCGCBHW

WDVGCGCBHW
PBM
Weirauch et al.(2014)
pTH9291
0.677 0.677
E2f
M08196_2.00
Drosophila melanogaster
AAWWBSSCGSCAA

TTGSCGSSVWWTT
ChIP-seq
Contrino et al.(2012)
Mf10
0.677 0.677
E2f5
M09042_2.00
Mus musculus
NGCGCSAAAN

NTTTSGCGCN
Misc
Kulakovskiy et al.(2013)
E2F5_MOUSE.H11MO.0.B
0.677 0.677
GSPATT00020286001
M01965_2.00
Paramecium tetraurelia
NNSGCGSBN

NVSCGCSNN
PBM
Weirauch et al.(2014)
pTH5647
0.662 0.662
E2F1
M02952_2.00
Homo sapiens
WWDGGCGCCAAW

WTTGGCGCCHWW
SELEX
Jolma et al.(2013)
E2F1_1
0.615 0.615
E2F1
M02953_2.00
Homo sapiens
WWKGGCGCCWWW

WWWGGCGCCMWW
SELEX
Jolma et al.(2013)
E2F1_2
0.615 0.615
E2F1
M02954_2.00
Homo sapiens
WWWKGGCGCCMWWW

WWWKGGCGCCMWWW
SELEX
Jolma et al.(2013)
E2F1_3
0.615 0.615
E2F1
M02955_2.00
Homo sapiens
AAWKGGCGCCAWTW

WAWTGGCGCCMWTT
SELEX
Jolma et al.(2013)
E2F1_4
0.615 0.615
E2F1
M04700_2.00
Homo sapiens
NWWWDGGCGCCAAAWH

DWTTTGGCGCCHWWWN
SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX
0.615 0.615
E2F1
M07938_2.00
Homo sapiens
VRRVNRVGCGSGMDS

SHKCSCGCBYNBYYB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD
0.615 0.615
E2F1
M09030_2.00
Homo sapiens
NVNDGGCGGGARVN

NBYTCCCGCCHNBN
Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A
0.615 0.615
E2f1
M09041_2.00
Mus musculus
NDDGGCGGGRVN

NBYCCCGCCHHN
Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A
0.615 0.615
E2F1
M09521_2.00
Homo sapiens
NNGGCGGGAA

TTCCCGCCNN
Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478
0.615 0.615
E2F1
M10444_2.00
Homo sapiens
THVGCGCGAAAAHKR

YMDTTTTCGCGCBDA
Transfac
Matys et al.(2006)
V$E2F_01
0.615 0.615
E2F1
M10445_2.00
Homo sapiens
BHKSGCGCSAAA

TTTSGCGCSMDV
Transfac
Matys et al.(2006)
V$E2F_03
0.615 0.615
E2F1
M10446_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_01
0.615 0.615
E2F1
M10447_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_02
0.615 0.615
E2F1
M10448_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3_01
0.615 0.615
E2F1
M10449_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q3
0.615 0.615
E2F1
M10450_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_01
0.615 0.615
E2F1
M10451_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4_02
0.615 0.615
E2F1
M10452_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q4
0.615 0.615
E2F1
M10453_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F1_Q6
0.615 0.615
E2F
M01959_2.00
Dictyostelium discoideum
NNGSGCGCSHN

NDSGCGCSCNN
PBM
Weirauch et al.(2014)
pTH5403
0.600 0.600
E2F6
M08107_2.00
Homo sapiens
DGGMGGGARVN

NBYTCCCKCCH
ChIP-seq
Mathelier et al.(2014)
MA0471.1
0.600 0.600
E2F6
M07939_2.00
Homo sapiens
NDSGCGGGARV

BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F6_UCD
0.600 0.600
E2F6
M07940_2.00
Homo sapiens
NDVGCGGGARV

BYTCCCGCBHN
ChIP-seq
Gerstein et al.(2012)
K562b_E2F6_UCD
0.600 0.600
E2F6
M07941_2.00
Homo sapiens
NDSGCGGGARV

BYTCCCGCSHN
ChIP-seq
Gerstein et al.(2012)
K562_E2F6_HudsonAlpha
0.600 0.600
E2F6
M09034_2.00
Homo sapiens
NRGGMGGGARRNN

NNYYTCCCKCCYN
Misc
Kulakovskiy et al.(2013)
E2F6_HUMAN.H11MO.0.A
0.600 0.600
E2f6
M09043_2.00
Mus musculus
NDGGCGGGARVV

BBYTCCCGCCHN
Misc
Kulakovskiy et al.(2013)
E2F6_MOUSE.H11MO.0.A
0.600 0.600
E2F6
M09523_2.00
Homo sapiens
VGCGGGARNN

NNYTCCCGCB
Misc
Heinz et al.(2010)
Hela-E2F6_GSE31477
0.600 0.600
E2F6
M10456_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2F6_01
0.600 0.600
estExt_gwp_GeneWisePlus.C_Chr_02.00010270
M01969_2.00
Ostreococcus tauri
HRVGCGCCNN

NNGGCGCBYD
PBM
Weirauch et al.(2014)
pTH5701
0.554 0.554
efl-2
M01966_2.00
Caenorhabditis elegans
NDBGCGSBNN

NNVSCGCVHN
PBM
Weirauch et al.(2014)
pTH5916
0.477 0.477
efl-2
M00662_2.00
Caenorhabditis elegans
NSGCGSNNDN

NHNNSCGCSN
PBM
Narasimhan et al.(2015)
pTH9173
0.477 0.477
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPA00000016649 E2F 12 76

Links

Other E2F family TFs
Other Pythium aphanidermatum TFs

1035 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000007611 Ailuropoda melanoleuca ENSAMEG00000007611 I 0.000
ZNF768 Cavia porcellus ENSCPOG00000005238 I 0.000
Zfp689 Mus musculus ENSMUSG00000048921 N 0.000
ENSNLEG00000000136 Nomascus leucogenys ENSNLEG00000000136 N 0.000
ZNF689 Otolemur garnettii ENSOGAG00000026653 N 0.000
ENSPPYG00000007281 Pongo abelii ENSPPYG00000007281 N 0.000
ZNF689 Pan troglodytes ENSPTRG00000008010 N 0.000
ZNF689 Pteropus vampyrus ENSPVAG00000011028 N 0.000
Zfp689 Rattus norvegicus ENSRNOG00000018877 N 0.000
ZNF689 Sorex araneus ENSSARG00000008757 N 0.000
ZNF689 Tursiops truncatus ENSTTRG00000001740 N 0.000
ENSBTAP00000018399-D1 Bos grunniens ENSBTAP00000018399-D1 N 0.000
ENSP00000287461 Macaca fascicularis ENSP00000287461 N 0.000
ENSMPUG00000012298 Mustela putorius furo ENSMPUG00000012298 N 0.000
ZNF689 Macaca mulatta ENSMMUG00000001121 N 0.000
ZNF689 Bos taurus ENSBTAG00000018094 N 0.000
ZNF689 Canis familiaris ENSCAFG00000016625 N 0.000
ZNF689 Callithrix jacchus ENSCJAG00000002702 N 0.000
ENSCSAG00000005871 Chlorocebus sabaeus ENSCSAG00000005871 N 0.000
ZNF689 Dasypus novemcinctus ENSDNOG00000046268 N 0.000
ENSDORG00000009876 Dipodomys ordii ENSDORG00000009876 N 0.000
ZNF689 Equus caballus ENSECAG00000004417 N 0.000
ZNF689 Erinaceus europaeus ENSEEUG00000006230 N 0.000
ZNF689 Felis catus ENSFCAG00000009801 N 0.000
ZNF689 Homo sapiens ENSG00000156853 N 0.000
ENSMICG00000004730 Microcebus murinus ENSMICG00000004730 N 0.000
Myotis_brandtii_ZNF689_10014483 Myotis brandtii Myotis_brandtii_ZNF689_10014483 N 0.000