maker-par_contig_1219-snap-gene-0.2 (Pythium arrhenomanes)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 maker-par_contig_1219-snap-gene-0.2 T173249_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2f3
M00153_2.00 		Mus musculus
NNNNGCGSNN
NNSCGCNNNN		 PBM
Badis et al.(2009)
E2F3_3752 		0.467 0.467
E2F3
M01964_2.00 		Taeniopygia guttata
NNSGCGCGMN
NKCGCGCSNN		 PBM
Weirauch et al.(2014)
pTH9288 		0.467 0.467
E2F3
M02956_2.00 		Homo sapiens
RAAAAKGGCGCCAAAANN
NNTTTTGGCGCCMTTTTY		 SELEX
Jolma et al.(2013)
E2F3_1 		0.467 0.467
E2F3
M02957_2.00 		Homo sapiens
DAAAADGGCGCCMWWTTY
RAAWWKGGCGCCHTTTTH		 SELEX
Jolma et al.(2013)
E2F3_2 		0.467 0.467
E2F3
M02958_2.00 		Homo sapiens
NDTTTTGGCGCCAAAABH
DVTTTTGGCGCCAAAAHN		 SELEX
Jolma et al.(2013)
E2F3_3 		0.467 0.467
E2F3
M04701_2.00 		Homo sapiens
DWTTTGGCGCCAAAWH
DWTTTGGCGCCAAAWH		 SELEX
Yin et al.(2017)
E2F3_eDBD_HT-SELEX 		0.467 0.467
E2F3
M09031_2.00 		Homo sapiens
NDGGCGGGAAR
YTTCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F3_HUMAN.H11MO.0.A 		0.467 0.467
E2f3
M09038_2.00 		Mus musculus
DSGCGGGARV
BYTCCCGCSH		 Misc
Kulakovskiy et al.(2013)
E2F3_MOUSE.H11MO.0.A 		0.467 0.467
E2F3
M10454_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6_01 		0.467 0.467
E2F3
M10455_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F3_Q6 		0.467 0.467
E2F3
M04702_2.00 		Homo sapiens
DTTTTGGCGCCAAAAH
DTTTTGGCGCCAAAAH		 SELEX
Yin et al.(2017)
E2F3_eDBD_Methyl-HT-SELEX 		0.467 0.467
ENSACAG00000013716
M01960_2.00 		Anolis carolinensis
HNVGCGCBND
HNVGCGCBND		 PBM
Weirauch et al.(2014)
pTH9221 		0.444 0.444
E2f2
M00154_2.00 		Mus musculus
NDNNGCGSBN
NVSCGCNNHN		 PBM
Badis et al.(2009)
E2F2_1022 		0.444 0.444
ENSOANG00000014967
M01962_2.00 		Ornithorhynchus anatinus
NDSGCGCSHN
NDSGCGCSHN		 PBM
Weirauch et al.(2014)
pTH9382 		0.444 0.444
E2F1
M02952_2.00 		Homo sapiens
WWDGGCGCCAAW
WTTGGCGCCHWW		 SELEX
Jolma et al.(2013)
E2F1_1 		0.444 0.444
E2F1
M02953_2.00 		Homo sapiens
WWKGGCGCCWWW
WWWGGCGCCMWW		 SELEX
Jolma et al.(2013)
E2F1_2 		0.444 0.444
E2F1
M02954_2.00 		Homo sapiens
WWWKGGCGCCMWWW
WWWKGGCGCCMWWW		 SELEX
Jolma et al.(2013)
E2F1_3 		0.444 0.444
E2F1
M02955_2.00 		Homo sapiens
AAWKGGCGCCAWTW
WAWTGGCGCCMWTT		 SELEX
Jolma et al.(2013)
E2F1_4 		0.444 0.444
E2F1
M04700_2.00 		Homo sapiens
NWWWDGGCGCCAAAWH
DWTTTGGCGCCHWWWN		 SELEX
Yin et al.(2017)
E2F1_FL_HT-SELEX 		0.444 0.444
E2F1
M07938_2.00 		Homo sapiens
VRRVNRVGCGSGMDS
SHKCSCGCBYNBYYB		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_E2F1_UCD 		0.444 0.444
E2F1
M09030_2.00 		Homo sapiens
NVNDGGCGGGARVN
NBYTCCCGCCHNBN		 Misc
Kulakovskiy et al.(2013)
E2F1_HUMAN.H11MO.0.A 		0.444 0.444
E2f1
M09041_2.00 		Mus musculus
NDDGGCGGGRVN
NBYCCCGCCHHN		 Misc
Kulakovskiy et al.(2013)
E2F1_MOUSE.H11MO.0.A 		0.444 0.444
E2f2
M09039_2.00 		Mus musculus
GGCGCGMAWC
GWTKCGCGCC		 Misc
Kulakovskiy et al.(2013)
E2F2_MOUSE.H11MO.0.B 		0.444 0.444
E2F1
M09521_2.00 		Homo sapiens
NNGGCGGGAA
TTCCCGCCNN		 Misc
Heinz et al.(2010)
Hela-E2F1_GSE22478 		0.444 0.444
E2F1
M10444_2.00 		Homo sapiens
THVGCGCGAAAAHKR
YMDTTTTCGCGCBDA		 Transfac
Matys et al.(2006)
V$E2F_01 		0.444 0.444
E2F1
M10445_2.00 		Homo sapiens
BHKSGCGCSAAA
TTTSGCGCSMDV		 Transfac
Matys et al.(2006)
V$E2F_03 		0.444 0.444
E2F1
M10446_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_01 		0.444 0.444
E2F1
M10447_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_02 		0.444 0.444
E2F1
M10448_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3_01 		0.444 0.444
E2F1
M10449_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q3 		0.444 0.444
E2F1
M10450_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_01 		0.444 0.444
E2F1
M10451_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4_02 		0.444 0.444
E2F1
M10452_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q4 		0.444 0.444
E2F1
M10453_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2F1_Q6 		0.444 0.444
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPR00000020205 E2F 3 47

Links

Other E2F family TFs
Other Pythium arrhenomanes TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK04229.1 Cannabis sativa PK04229.1 N 0.533
Gfo_R014499 Geospiza fortis Gfo_R014499 I 0.514
Aan_R013725 Calypte anna Aan_R013725 I 0.514
ENSPMAG00000000488 Petromyzon marinus ENSPMAG00000000488 I 0.514
Afo_R001855 Aptenodytes forsteri Afo_R001855 I 0.514
Aan_R007409 Calypte anna Aan_R007409 I 0.514
ENSMEUG00000012534 Macropus eugenii ENSMEUG00000012534 I 0.514
Brh_R002393 Buceros rhinoceros Brh_R002393 I 0.514
E2F5 Vicugna pacos ENSVPAG00000003343 I 0.514
E2F5 Microcebus murinus ENSMICG00000003567 I 0.514
E2F5 Meleagris gallopavo ENSMGAG00000011709 I 0.514
Afo_R010573 Aptenodytes forsteri Afo_R010573 I 0.514
Tal_R001534 Tyto alba Tal_R001534 I 0.514
Tal_R005486 Tyto alba Tal_R005486 I 0.514
ENSSHAG00000011293 Sarcophilus harrisii ENSSHAG00000011293 I 0.514
ENSTSYG00000014083 Tarsius syrichta ENSTSYG00000014083 I 0.514
ENSAPLG00000016108 Anas platyrhynchos ENSAPLG00000016108 I 0.514
ENSAPLG00000005664 Anas platyrhynchos ENSAPLG00000005664 I 0.514
E2F5 Erinaceus europaeus ENSEEUG00000014470 I 0.514
E2F5 Sorex araneus ENSSARG00000012960 I 0.514
ENSMPUG00000010751 Mustela putorius furo ENSMPUG00000010751 I 0.514
ISCW000457 Ixodes scapularis ISCW000457 I 0.514
E2f5 Dipodomys ordii ENSDORG00000011212 I 0.514
gw1.7.124.1 Bigelowiella natans gw1.7.124.1 N 0.511
ENSSTOG00000013339 Ictidomys tridecemlineatus ENSSTOG00000013339 I 0.487
ENSSHAG00000011240 Sarcophilus harrisii ENSSHAG00000011240 I 0.487
ENSMMUP00000008413 Macaca fascicularis ENSMMUP00000008413 I 0.487
E2F5 Canis familiaris ENSCAFG00000008628 I 0.487
E2F5 Callithrix jacchus ENSCJAG00000000387 I 0.487
E2F5 Bos taurus ENSBTAG00000009378 I 0.487
Brh_R008700 Buceros rhinoceros Brh_R008700 I 0.486
ENSOARG00000013715 Ovis aries ENSOARG00000013715 I 0.475
E2F5 Equus caballus ENSECAG00000013766 I 0.475
ENSCPOG00000026476 Cavia porcellus ENSCPOG00000026476 I 0.469
Cmyd_10014690 Chelonia mydas Cmyd_10014690 I 0.467
maker-piw_contig_136-snap-gene-0.25 Pythium iwayamai maker-piw_contig_136-snap-gene-0.25 I 0.467
Aan_R008086 Calypte anna Aan_R008086 I 0.467
E2F1 Takifugu rubripes ENSTRUG00000011188 I 0.467
ENSMEUG00000002631 Macropus eugenii ENSMEUG00000002631 I 0.462
ENSNLEG00000004342 Nomascus leucogenys ENSNLEG00000004342 I 0.452
Gfo_R016024 Geospiza fortis Gfo_R016024 I 0.452
GRMZM2G404769 Zea mays GRMZM2G404769 I 0.447
GRMZM2G351232 Zea mays GRMZM2G351232 I 0.447
F443_00888 Phytophthora parasitica F443_00888 I 0.444
PITG_01579 Phytophthora infestans PITG_01579 I 0.444
Gfo_R013460 Geospiza fortis Gfo_R013460 I 0.444
ENSMMUP00000030996 Macaca fascicularis ENSMMUP00000030996 I 0.444
Myotis_brandtii_E2F1_10023721 Myotis brandtii Myotis_brandtii_E2F1_10023721 I 0.444
Pvit_05435 Pogona vitticeps Pvit_05435 I 0.444
estExt_fgenesh1_pg.C_1330005 Phytophthora capsici estExt_fgenesh1_pg.C_1330005 I 0.444
SSTP_0000951300 Strongyloides stercoralis SSTP_0000951300 I 0.444
E2F1 Pteropus vampyrus ENSPVAG00000010290 I 0.444
E2F1 Gorilla gorilla ENSGGOG00000003588 I 0.444
E2F1 Homo sapiens ENSG00000101412 D 0.444
ENSMGAG00000002385 Meleagris gallopavo ENSMGAG00000002385 I 0.444
E2F1 Microcebus murinus ENSMICG00000006921 I 0.444
E2F1 Macaca mulatta ENSMMUG00000023550 I 0.444
E2F1 Myotis lucifugus ENSMLUG00000015371 I 0.444
E2F1 Felis catus ENSFCAG00000005016 I 0.444
ENSFALG00000010803 Ficedula albicollis ENSFALG00000010803 I 0.444
ENSCSAG00000012265 Chlorocebus sabaeus ENSCSAG00000012265 I 0.444
E2F1 Cavia porcellus ENSCPOG00000001800 I 0.444
E2F1 Equus caballus ENSECAG00000023831 I 0.444
E2F1 Erinaceus europaeus ENSEEUG00000009987 I 0.444
ENSFALG00000005914 Ficedula albicollis ENSFALG00000005914 I 0.444
E2F1 Tursiops truncatus ENSTTRG00000010099 I 0.444
ENSMPUG00000017824 Mustela putorius furo ENSMPUG00000017824 I 0.444
E2f1 Rattus norvegicus ENSRNOG00000016708 I 0.444
ENSAMEG00000008991 Ailuropoda melanoleuca ENSAMEG00000008991 I 0.444
E2f3 Rattus norvegicus ENSRNOG00000029273 I 0.444
E2F1 Sus scrofa ENSSSCG00000007268 I 0.444
ENSSTOG00000002735 Ictidomys tridecemlineatus ENSSTOG00000002735 I 0.444
E2f1 Mus musculus ENSMUSG00000027490 D 0.444
E2F1 Pan troglodytes ENSPTRG00000013404 I 0.444
ENSOARG00000008548 Ovis aries ENSOARG00000008548 I 0.444
ENSNLEG00000010009 Nomascus leucogenys ENSNLEG00000010009 I 0.444
ENSPSIG00000015377 Pelodiscus sinensis ENSPSIG00000015377 I 0.444
E2F1 Oryctolagus cuniculus ENSOCUG00000000856 I 0.444
ENSPANG00000006985 Papio anubis ENSPANG00000006985 I 0.444
ENSPPYG00000010929 Pongo abelii ENSPPYG00000010929 I 0.444
GPUH_0001886201 Gongylonema pulchrum GPUH_0001886201 I 0.442
nDi.2.2.2.g03084 Dirofilaria immitis nDi.2.2.2.g03084 I 0.435