orange1.1g018790m.g (Citrus sinensis)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 orange1.1g018790m.g T173986_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.710 0.710
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.710 0.710
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.710 0.710
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.710 0.710
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.690 0.690
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.690 0.690
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.690 0.690
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.550 0.550
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.550 0.550
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.550 0.550
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.550 0.550
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.550 0.550
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.550 0.550
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.530 0.530
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.530 0.530
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.530 0.530
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g018790m E2F 25 89
orange1.1g018790m E2F 148 202

Links

Other E2F family TFs
Other Citrus sinensis TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_017926 Theobroma cacao TCM_017926 I 0.820
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.820
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.790
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.780
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.780
OB02G38920 Oryza brachyantha OB02G38920 I 0.740
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.740
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.740
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.740
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.730
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.730
DEL2 Arabidopsis lyrata Al_scaffold_0006_1397 I 0.730
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.728
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.720
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.720
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.720
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.710
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.710
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.710
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.710
E2FD Arabidopsis thaliana AT5G14960 D 0.710
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.700
Bra033767 Brassica rapa Bra033767 I 0.700
Bo1g074680 Brassica oleracea Bo1g074680 I 0.700
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.690
Solyc02g087310.2 Solanum lycopersicum Solyc02g087310.2 I 0.690
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.690
OBART06G09260 Oryza barthii OBART06G09260 I 0.680
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.670
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.640
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.633
maker-pve_contig_484-snap-gene-0.19 Pythium vexans maker-pve_contig_484-snap-gene-0.19 I 0.630
29822.m003421 Ricinus communis 29822.m003421 I 0.625
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I 0.620
PITG_06416 Phytophthora infestans PITG_06416 I 0.620
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I 0.610
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.603
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.603
CMT433C Cyanidioschyzon merolae CMT433C I 0.600
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.590
MDP0000248838 Malus domestica MDP0000248838 I 0.590
DEL1 Vitis vinifera VIT_17s0000g07630 I 0.588
MDP0000734535 Malus domestica MDP0000734535 I 0.588
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.581
VIT_14s0066g02370 Vitis vinifera VIT_14s0066g02370 I 0.581
E2FF Arabidopsis thaliana AT3G01330 I 0.581
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.574
Pm024664 Prunus mume Pm024664 I 0.574
Bostr.1460s0076 Boechera stricta Bostr.1460s0076 I 0.574
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.574
PRUPE_ppa015063mg Prunus persica PRUPE_ppa015063mg I 0.574
Bo2g012280 Brassica oleracea Bo2g012280 I 0.574
Lus10039455.g Linum usitatissimum Lus10039455.g I 0.574
Bra023497 Brassica rapa Bra023497 I 0.566
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.566
PK00080.1 Cannabis sativa PK00080.1 I 0.566
e2f7.L Xenopus laevis XB-GENE-1018449 I 0.560
Pvit_10252 Pogona vitticeps Pvit_10252 I 0.560
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I 0.560
Ca_15301 Cicer arietinum Ca_15301 I 0.559
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.559
gw.270.22.1 Branchiostoma floridae gw.270.22.1 I 0.551
E2F7 Homo sapiens ENSG00000165891 D 0.550
ENSOANG00000007449 Ornithorhynchus anatinus ENSOANG00000007449 I 0.550
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I 0.550
E2F7 Procavia capensis ENSPCAG00000000596 I 0.550
E2F7 Choloepus hoffmanni ENSCHOG00000004785 I 0.550
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I 0.550
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.544
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.544
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.544
OS02G0739700 Oryza sativa OS02G0739700 I 0.544
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.544
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.544
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.544
OBART02G31930 Oryza barthii OBART02G31930 I 0.544
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.544
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.544
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.544
e2f8 Takifugu rubripes ENSTRUG00000015792 I 0.540
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I 0.540
F775_06335 Aegilops tauschii F775_06335 I 0.537
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I 0.530
E2F8 Tursiops truncatus ENSTTRG00000005707 I 0.530
E2F8 Bos taurus ENSBTAG00000017446 I 0.530
ENSGMOG00000016169 Gadus morhua ENSGMOG00000016169 I 0.530
E2f8 Mus musculus ENSMUSG00000046179 I 0.530
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I 0.530
E2F8 Gorilla gorilla ENSGGOG00000011430 I 0.530
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I 0.530
Bra039127 Brassica rapa Bra039127 I 0.529
30147.m014015 Ricinus communis 30147.m014015 I 0.529
mgf016204m Mimulus guttatus mgf016204m I 0.529
cassava23001.valid.m1 Manihot esculenta cassava23001.valid.m1 I 0.529
Bo5g155250 Brassica oleracea Bo5g155250 I 0.529
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.529
mgf007657m Mimulus guttatus mgf007657m I 0.529
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.529
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.522
GSMUA_Achr7G02220_001 Musa acuminata GSMUA_Achr7G02220_001 I 0.522
Eucgr.K02883 Eucalyptus grandis Eucgr.K02883 I 0.522
Thhalv10010430m.g Eutrema salsugineum Thhalv10010430m.g I 0.522
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.522
Si019635m.g Setaria italica Si019635m.g I 0.522
GLYMA05G01760 Glycine max GLYMA05G01760 I 0.522
DEL1 Arabidopsis lyrata fgenesh2_kg.5__1169__AT3G48160.2 I 0.522
GLYMA04G34870 Glycine max GLYMA04G34870 I 0.522
TCM_011971 Theobroma cacao TCM_011971 I 0.522
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.522
gene09494-v1.0-hybrid Fragaria vesca gene09494-v1.0-hybrid I 0.521
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I 0.520
orange1.1g045382m.g Citrus sinensis orange1.1g045382m.g I 0.520
XP_002164164.1 Hydra magnipapillata XP_002164164.1 I 0.520
L798_00191 Zootermopsis nevadensis L798_00191 I 0.520
SapurV1A.1521s0010 Salix purpurea SapurV1A.1521s0010 I 0.515
evm.TU.supercontig_35.34 Carica papaya evm.TU.supercontig_35.34 I 0.515
Bra018080 Brassica rapa Bra018080 I 0.515
LotgiG168338 Lottia gigantea LotgiG168338 I 0.510
E2F8 Anolis carolinensis ENSACAG00000015743 I 0.510
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I 0.510
chr1.CM1956.640.nc Lotus japonicus chr1.CM1956.640.nc I 0.507
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.507
Bo8g076700 Brassica oleracea Bo8g076700 I 0.507
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.507
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.507
E2FE Arabidopsis thaliana AT3G48160 D 0.507
Traes_7BS_CCA195724 Triticum aestivum Traes_7BS_CCA195724 I 0.507
E2F8 Ochotona princeps ENSOPRG00000012881 I 0.505
Traes_6DL_90C72AE92 Triticum aestivum Traes_6DL_90C72AE92 I 0.504
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.500
ORGLA06G0087600 Oryza glaberrima ORGLA06G0087600 I 0.500
OPUNC06G08860 Oryza punctata OPUNC06G08860 I 0.500
Pavir.Db01700 Panicum virgatum Pavir.Db01700 I 0.500
ORUFI06G09470 Oryza rufipogon ORUFI06G09470 I 0.500
OGLUM06G09840 Oryza glumaepatula OGLUM06G09840 I 0.500
F775_15908 Aegilops tauschii F775_15908 I 0.500
E2F8 Meleagris gallopavo ENSMGAG00000002303 I 0.500
E2f7 Mus musculus ENSMUSG00000020185 D 0.500
OS06G0245900 Oryza sativa OS06G0245900 I 0.500
ONIVA06G10700 Oryza nivara ONIVA06G10700 I 0.500
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.500
Si006412m.g Setaria italica Si006412m.g I 0.500
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.500
Cla008447 Citrullus lanatus Cla008447 I 0.496
BRADI3G59740 Brachypodium distachyon BRADI3G59740 I 0.489
ENSPMAG00000007204 Petromyzon marinus ENSPMAG00000007204 I 0.486
Cla019450 Citrullus lanatus Cla019450 I 0.474
OLONG_012839 Oryza longistaminata OLONG_012839 I 0.472
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I 0.471
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I 0.471
BGIOSGA022619 Oryza indica BGIOSGA022619 I 0.465
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.464
Aquca_002_00349 Aquilegia coerulea Aquca_002_00349 I 0.463
fgenesh2_pg.scaffold_132000019 Physcomitrella patens fgenesh2_pg.scaffold_132000019 I 0.463
maker-pag1_scaffold_45-snap-gene-0.28 Pythium aphanidermatum maker-pag1_scaffold_45-snap-gene-0.28 I 0.463
PK04229.1 Cannabis sativa PK04229.1 N 0.460
Pavir.J32284 Panicum virgatum Pavir.J32284 I 0.460
HelroG187766 Helobdella robusta HelroG187766 I 0.460
Phyra77344 Phytophthora ramorum Phyra77344 I 0.459
e_gw1.178.5.1 Phytophthora capsici e_gw1.178.5.1 I 0.456
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I 0.456
PYU1_G013070 Pythium ultimum PYU1_G013070 I 0.456
maker-pir_contig_104-fgenesh-gene-0.11 Pythium irregulare maker-pir_contig_104-fgenesh-gene-0.11 I 0.456
maker-piw_contig_1993-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1993-fgenesh-gene-0.1 I 0.456
fgenesh1_pg.1__455 Bigelowiella natans fgenesh1_pg.1__455 I 0.450
F443_02115 Phytophthora parasitica F443_02115 I 0.449
Physo156920 Phytophthora sojae Physo156920 I 0.449
EuGene.0000050713 Micromonas pusilla EuGene.0000050713 I 0.449
TRIUR3_19744 Triticum urartu TRIUR3_19744 I 0.448
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I 0.441
AMSG_04376 Thecamonas trahens AMSG_04376 N 0.440
fgenesh_scip_prom.28083.1342 Phytophthora lateralis fgenesh_scip_prom.28083.1342 I 0.437
GUITHDRAFT_133924 Guillardia theta GUITHDRAFT_133924 I 0.429