CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCSAVG00000000458
(
Ciona savignyi
)
EBF1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF16422 (COE1_DBD)
(none)
ENSCSAVG00000000458
T174519_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.827
0.827
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.827
0.827
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.827
0.827
EBF3
M10461_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.813
0.813
Ebf4
M10468_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.787
0.787
EBF4
M10460_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.787
0.787
Ebf2
M10467_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.773
0.773
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.733
0.733
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000000806
EBF1
5
229
PQLPGSAVRGWMQTSLIEPMASGNVGLHRAHFEKQPPNNLRKSNFFHFVLALYDRQGQPVEIERSAFVGFIENETEIAGENTNNGIQYRLQLLYQNGLRTEQDVYVRLIDSATKQSITYEGQDKNPEMRRVLLTHEIMCSRCCDKKSCGNRNETPSDPVVIDRYFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVHVDGHVLAVSDNMFVHNNSKHGRRARRV
ENSCSAVP00000000807
EBF1
1
205
YSGNVGLHRAHFEKQPPNNLRKSNFFHFVLALYDRQGQPVEIERSAFVGFIENETEIAGENTNNGIQYRLQLLYQNGLRTEQDVYVRLIDSATKQSITYEGQDKNPEMRRVLLTHEIMCSRCCDKKSCGNRNETPSDPVVIDRYFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVHVDGHVLAVSDNMFVHNNSKHGRRARRV
ENSCSAVP00000000808
EBF1
1
204
SGNVGLHRAHFEKQPPNNLRKSNFFHFVLALYDRQGQPVEIERSAFVGFIENETEIAGENTNNGIQYRLQLLYQNGLRTEQDVYVRLIDSATKQSITYEGQDKNPEMRRVLLTHEIMCSRCCDKKSCGNRNETPSDPVVIDRYFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVHVDGHVLAVSDNMFVHNNSKHGRRARRV
ENSCSAVP00000000809
EBF1
1
201
VGLHRAHFEKQPPNNLRKSNFFHFVLALYDRQGQPVEIERSAFVGFIENETEIAGENTNNGIQYRLQLLYQNGLRTEQDVYVRLIDSATKQSITYEGQDKNPEMRRVLLTHEIMCSRCCDKKSCGNRNETPSDPVVIDRYFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVHVDGHVLAVSDNMFVHNNSKHGRRARRV
ENSCSAVP00000000810
EBF1
1
169
VGLHRAHFEKQPPNNLRKSNFFHFVLALYDRQGQPVEIERSAFVGFIENETEIAGENTNNGIQYRLQLLYQNGLRTEQDVYVRLIDSATKQSITYEGQDKNPEMRRVLLTHEIMCSRCCDKKSCGNRNETPSDPVVIDRLMHLDENVNCQYGIKKKSLNKSYVVLECCF
ENSCSAVP00000000810
EBF1
180
263
QSTDFKINMCNMNDTDLHFYSRYFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVHVDGHVLAVSDNMFVHNNSKHGRRARRV
Links
Other
EBF1
family TFs
Other
Ciona savignyi
TFs
383 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy