CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g08363
(
Litomosoides sigmodontis
)
EBF1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF16422 (COE1_DBD)
(none)
nLs.2.1.2.g08363
T174947_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EBF3
M10461_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.749
0.749
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.744
0.744
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.744
0.744
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.744
0.744
EBF4
M10460_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.740
0.740
Ebf2
M10467_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COE2_01
0.736
0.736
Ebf4
M10468_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_01
0.736
0.736
kn
M03721_2.00
Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV
SELEX
Nitta et al.(2015)
kn_1
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t08363-RA
EBF1
27
253
NPAAAAAAAAAAAAAAATVVDSSPVSAQLARAHFEKHPPNNLRKSNFFHFVIALYDRAGQPVEIEKTQFADFVEKELEVDGQDTRNGIHYRLWLTYANGLRAEQDLYVRLVDSVSKQAIAYEGQDKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVLSTTARVDGPLLAISDNMFVHNNSKHGRRAKRV
Links
Other
EBF1
family TFs
Other
Litomosoides sigmodontis
TFs
268 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy