CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Brh_R004752
(
Buceros rhinoceros
)
Ets
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00178 (Ets)
IPR000418
Brh_R004752
T177708_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPDEF
M02973_2.00
Homo sapiens
AMCCGGATRTD
HAYATCCGGKT
SELEX
Jolma et al.(2013)
SPDEF_1
0.971
0.965
SPDEF
M02974_2.00
Homo sapiens
ATRATCCGGGAMMHY
RDKKTCCCGGATYAT
SELEX
Jolma et al.(2013)
SPDEF_2
0.971
0.965
SPDEF
M02975_2.00
Homo sapiens
RCAGDAAGAAGTAWWM
KWWTACTTCTTHCTGY
SELEX
Jolma et al.(2013)
SPDEF_3
0.971
0.965
SPDEF
M02976_2.00
Homo sapiens
AMCCGGATRTD
HAYATCCGGKT
SELEX
Jolma et al.(2013)
SPDEF_4
0.971
0.965
SPDEF
M02977_2.00
Homo sapiens
WTRATCCGGGACCMC
GKGGTCCCGGATYAW
SELEX
Jolma et al.(2013)
SPDEF_5
0.971
0.965
SPDEF
M02978_2.00
Homo sapiens
RCAGDAAGAMGTAWHM
KDWTACKTCTTHCTGY
SELEX
Jolma et al.(2013)
SPDEF_6
0.971
0.965
SPDEF
M04748_2.00
Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN
SELEX
Yin et al.(2017)
SPDEF_eDBD_HT-SELEX
0.971
0.965
SPDEF
M04750_2.00
Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN
SELEX
Yin et al.(2017)
SPDEF_FL_HT-SELEX
0.971
0.965
SPDEF
M09530_2.00
Homo sapiens
WVCMGGAWVY
RBWTCCKGBW
Misc
Heinz et al.(2010)
VCaP-SPDEF_SRA014231
0.971
0.965
SPDEF
M04749_2.00
Homo sapiens
NAVCMGGATRYD
HRYATCCKGBTN
SELEX
Yin et al.(2017)
SPDEF_eDBD_Methyl-HT-SELEX
0.971
0.965
SPDEF
M04751_2.00
Homo sapiens
NAVCMGKATRYD
HRYATMCKGBTN
SELEX
Yin et al.(2017)
SPDEF_FL_Methyl-HT-SELEX
0.971
0.965
Spdef
M00159_2.00
Mus musculus
NNVMGGAHNN
NNDTCCKBNN
PBM
Badis et al.(2009)
Spdef_0905
0.966
0.947
Spdef
M01488_2.00
Mus musculus
NDNVMGGAHN
NDTCCKBNHN
PBM
Wei et al.(2010)
Spdef
0.966
0.947
Ets98B
M03727_2.00
Drosophila melanogaster
TAMCGGATGCN
NGCATCCGKTA
SELEX
Nitta et al.(2015)
Ets98B_1
0.959
0.807
Ets98B
M03728_2.00
Drosophila melanogaster
TKGCGGATGCN
NGCATCCGCMA
SELEX
Nitta et al.(2015)
Ets98B_2
0.959
0.807
Ets98B
M03729_2.00
Drosophila melanogaster
ATGATCCGGGACN
NGTCCCGGATCAT
SELEX
Nitta et al.(2015)
Ets98B_3
0.959
0.807
Ets98B
M03730_2.00
Drosophila melanogaster
GSATMCGKTA
TAMCGKATSC
SELEX
Nitta et al.(2015)
Ets98B_4
0.959
0.807
Ets98B
M03731_2.00
Drosophila melanogaster
ATGATCCGGGASN
NSTCCCGGATCAT
SELEX
Nitta et al.(2015)
Ets98B_5
0.959
0.807
Ets98B
M06191_2.00
Drosophila melanogaster
ASCCGGAWC
GWTCCGGST
B1H
Zhu et al.(2011)
Ets98B_SANGER_10_FBgn0005659
0.959
0.807
For this family, TFs with SR scores >
0.717
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Brh_R004752
Ets
286
343
LPGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFV
Links
Other
Ets
family TFs
Other
Buceros rhinoceros
TFs
258 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy