AT3G07500 (Arabidopsis thaliana)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 AT3G07500 T178985_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G07500.1 FAR1 47 136

Links

Other FAR1 family TFs
Other Arabidopsis thaliana TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_300886.1 Arabidopsis lyrata scaffold_300886.1 N 0.956
Cagra.0133s0093 Capsella grandiflora Cagra.0133s0093 N 0.922
Carubv10014621m.g Capsella rubella Carubv10014621m.g N 0.922
Bostr.22252s0282 Boechera stricta Bostr.22252s0282 N 0.911
Bo5g141470 Brassica oleracea Bo5g141470 N 0.878
Eucgr.K02085 Eucalyptus grandis Eucgr.K02085 N 0.822
mgf009623m Mimulus guttatus mgf009623m N 0.811
gene17500-v1.0-hybrid Fragaria vesca gene17500-v1.0-hybrid N 0.811
SapurV1A.0137s0280 Salix purpurea SapurV1A.0137s0280 N 0.800
orange1.1g028717m.g Citrus sinensis orange1.1g028717m.g N 0.800
Gorai.N002600 Gossypium raimondii Gorai.N002600 N 0.800
evm.TU.supercontig_8.53 Carica papaya evm.TU.supercontig_8.53 N 0.800
Ciclev10016654m.g Citrus clementina Ciclev10016654m.g N 0.800
POPTR_0014s17500 Populus trichocarpa POPTR_0014s17500 N 0.800
TCM_002647 Theobroma cacao TCM_002647 N 0.800
PRUPE_ppa011264mg Prunus persica PRUPE_ppa011264mg N 0.800
30178.m000864 Ricinus communis 30178.m000864 N 0.800
VIT_00s0174g00120 Vitis vinifera VIT_00s0174g00120 N 0.789
MDP0000243502 Malus domestica MDP0000243502 N 0.767
Cla015099 Citrullus lanatus Cla015099 N 0.767
MDP0000123745 Malus domestica MDP0000123745 N 0.767
MDP0000156730 Malus domestica MDP0000156730 N 0.756
Cucsa.388100 Cucumis sativus Cucsa.388100 N 0.744
VIT_00s0269g00010 Vitis vinifera VIT_00s0269g00010 N 0.700