Pavir.Ca00202 (Panicum virgatum)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Pavir.Ca00202 T181683_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00202.1.p FAR1 96 184
Pavir.Ca00202.2.p FAR1 95 183

Links

Other FAR1 family TFs
Other Panicum virgatum TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA006277 Oryza indica BGIOSGA006277 N 0.742
BGIOSGA022378 Oryza indica BGIOSGA022378 N 0.753
BGIOSGA037035 Oryza indica BGIOSGA037035 N 0.955
BRADI1G48350 Brachypodium distachyon BRADI1G48350 N 0.764
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N 0.708
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N 0.955
GRMZM2G034868 Zea mays GRMZM2G034868 N 1.000
GRMZM2G043250 Zea mays GRMZM2G043250 N 0.730
GRMZM2G048987 Zea mays GRMZM2G048987 N 0.764
MLOC_13034 Hordeum vulgare MLOC_13034 N 0.753
MLOC_43316 Hordeum vulgare MLOC_43316 N 0.742
MLOC_62808 Hordeum vulgare MLOC_62808 N 0.955
OB02G27690 Oryza brachyantha OB02G27690 N 0.730
OB06G14070 Oryza brachyantha OB06G14070 N 0.753
OB12G13670 Oryza brachyantha OB12G13670 N 0.966
OLONG_000187 Oryza longistaminata OLONG_000187 N 0.955
OLONG_014957 Oryza longistaminata OLONG_014957 N 0.753
ONIVA02G22250 Oryza nivara ONIVA02G22250 N 0.742
ONIVA06G05610 Oryza nivara ONIVA06G05610 N 0.753
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N 0.742
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N 0.753
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N 0.955
OS02G0550900 Oryza sativa OS02G0550900 N 0.742
OS06G0166100 Oryza sativa OS06G0166100 N 0.753
OS12G0160900 Oryza sativa OS12G0160900 N 0.955
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N 0.730
Pavir.Ab01899 Panicum virgatum Pavir.Ab01899 N 0.719
Pavir.Ba00843 Panicum virgatum Pavir.Ba00843 N 0.775
Pavir.Bb02863 Panicum virgatum Pavir.Bb02863 N 0.764
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N 1.000
PDK_20s1320921g004 Phoenix dactylifera PDK_20s1320921g004 N 0.719
Sb02g034560 Sorghum bicolor Sb02g034560 N 0.764
Sb04g022400 Sorghum bicolor Sb04g022400 N 0.708
Sb08g003780 Sorghum bicolor Sb08g003780 N 0.989
Si009370m.g Setaria italica Si009370m.g N 1.000
Si016477m.g Setaria italica Si016477m.g N 0.730
Si029002m.g Setaria italica Si029002m.g N 0.764
Traes_4AL_8B3A3CC2F Triticum aestivum Traes_4AL_8B3A3CC2F N 0.742
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N 0.966
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N 0.966
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N 0.966
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N 0.753
Traes_7DS_016F8E2EA Triticum aestivum Traes_7DS_016F8E2EA N 0.742
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N 0.753
TRIUR3_03719 Triticum urartu TRIUR3_03719 N 0.753
TRIUR3_25143 Triticum urartu TRIUR3_25143 N 0.966