CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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foxj2
(
Gasterosteus aculeatus
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSGACG00000010572
T185829_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FKH2
M00045_2.00
Saccharomyces cerevisiae
GTAAACAH
DTGTTTAC
PBM
Badis et al.(2008)
FKH2_4517
0.728
0.523
FKH2
M01542_2.00
Saccharomyces cerevisiae
NNVWMAAYAN
NTRTTKWBNN
PBM
Zhu et al.(2009)
Fkh2
0.728
0.523
FKH2
M07474_2.00
Saccharomyces cerevisiae
GTAAACA
TGTTTAC
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0297.1
0.728
0.523
FKH2
M08556_2.00
Saccharomyces cerevisiae
NNNNDNGTAAACAAANNNDV
BHNNNTTTGTTTACNHNNNN
Misc
DeBoer et al.(2011)
YNL068C_830
0.728
0.523
Foxj2
M01980_2.00
Mus musculus
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6638
0.720
0.640
Foxj2
M00790_2.00
Mus musculus
VHMAAYANN
NNTRTTKDB
PBM
Weirauch et al.(2013)
pTH3043
0.718
0.640
FOXJ2
M03016_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_1
0.718
0.640
FOXJ2
M03017_2.00
Homo sapiens
RTAAACAH
DTGTTTAY
SELEX
Jolma et al.(2013)
FOXJ2_2
0.718
0.640
FOXJ2
M03018_2.00
Homo sapiens
GTAAACAWMAACA
TGTTKWTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_3
0.718
0.640
FOXJ2
M04809_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_HT-SELEX
0.718
0.640
FOXJ2
M09084_2.00
Homo sapiens
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_HUMAN.H11MO.0.C
0.718
0.640
Foxj2
M09100_2.00
Mus musculus
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_MOUSE.H11MO.0.C
0.718
0.640
FOXJ2
M10527_2.00
Homo sapiens
HHNHMRAYAAAYANHNND
HNNDNTRTTTRTYKDNDD
Transfac
Matys et al.(2006)
V$FOXJ2_01
0.718
0.640
FOXJ2
M10528_2.00
Homo sapiens
VYMAYAATATTTKN
NMAAATATTRTKRB
Transfac
Matys et al.(2006)
V$FOXJ2_02
0.718
0.640
FOXJ2
M04810_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_Methyl-HT-SELEX
0.718
0.640
Foxj3
M00160_2.00
Mus musculus
NRTAAACAHN
NDTGTTTAYN
PBM
Badis et al.(2009)
Foxj3_0982
0.709
0.616
Foxj3
M01981_2.00
Mus musculus
VNHHAYANN
NNTRTDDNB
PBM
Weirauch et al.(2014)
pTH6591
0.709
0.616
Foxj3
M03055_2.00
Mus musculus
ACGGACACAAT
ATTGTGTCCGT
SELEX
Jolma et al.(2013)
Foxj3_1
0.709
0.616
Foxj3
M03056_2.00
Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
Foxj3_2
0.709
0.616
Foxj3
M03057_2.00
Mus musculus
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_3
0.709
0.616
Foxj3
M03058_2.00
Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_4
0.709
0.616
Foxj3
M09102_2.00
Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A
0.709
0.616
FOXJ3
M03046_2.00
Homo sapiens
RTAAAVAA
TTBTTTAY
SELEX
Jolma et al.(2013)
FOXJ3_1
0.708
0.616
FOXJ3
M03047_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_2
0.708
0.616
FOXJ3
M03048_2.00
Homo sapiens
GTAAACATAAACA
TGTTTATGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_3
0.708
0.616
FOXJ3
M02736_2.00
Homo sapiens
AAACAATAAACA
TGTTTATTGTTT
SELEX
Jolma et al.(2010)
FOXJ3_dimer
0.708
0.616
FOXJ3
M02737_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2010)
FOXJ3_monomer
0.708
0.616
FOXJ3
M04859_2.00
Homo sapiens
DYGTMAACAH
DTGTTKACRH
SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX
0.708
0.616
FOXJ3
M09098_2.00
Homo sapiens
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A
0.708
0.616
FOXJ3
M04860_2.00
Homo sapiens
RYGTMAACAH
DTGTTKACRY
SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX
0.708
0.616
SPU_007644
M01987_2.00
Strongylocentrotus purpuratus
NNHHAYDNN
NNHRTDDNN
PBM
Weirauch et al.(2014)
pTH6497
0.707
0.593
FKH1
M01541_2.00
Saccharomyces cerevisiae
NNRTMAAYAN
NTRTTKAYNN
PBM
Zhu et al.(2009)
Fkh1
0.686
0.453
FKH1
M08555_2.00
Saccharomyces cerevisiae
NNGTAAACADVN
NBHTGTTTACNN
Misc
DeBoer et al.(2011)
YIL131C_2002
0.686
0.453
FOXK2
M08118_2.00
Homo sapiens
NNRTAAACANN
NNTGTTTAYNN
ChIP-seq
Mathelier et al.(2014)
MA1103.1
0.668
0.570
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000013983
Forkhead
56
143
KPPHSYATLIAMAIAAAPERKLSLNDIYTWISDRFPHYSRAGRGWKNSIRHNLSLNKCFRKVPRPQSDPGKGSYWTMDGPAEENQIPL
Links
Other
Forkhead
family TFs
Other
Gasterosteus aculeatus
TFs
460 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy