CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_129000050
(
Branchiostoma floridae
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
fgenesh2_pg.scaffold_129000050
T189330_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Foxn4
M01011_2.00
Mus musculus
NNNVACGCNN
NNGCGTBNNN
PBM
Nakagawa et al.(2013)
Foxn4
0.840
0.837
FOXN1
M10531_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$WHN_B
0.763
0.826
Foxn1
M01010_2.00
Mus musculus
NAHRCNNNNN
NNNNNGYDTN
PBM
Nakagawa et al.(2013)
Foxn1
0.763
0.814
jumu
M01012_2.00
Drosophila melanogaster
NNNNVACGCN
NGCGTBNNNN
PBM
Nakagawa et al.(2013)
Jumeau
0.739
0.686
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_129000050
Forkhead
373
463
KPAYSYSCLIAMALKNSKTGCLPVSEIYNFMCDNFPYFKTAPDGWKNSVRHNLSLNKCFEKVEKSTGGTSKKGCLWTLNPAKVAKMEEEVQ
Links
Other
Forkhead
family TFs
Other
Branchiostoma floridae
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy