TF Information

Trps1 *(Rattus norvegicus)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00320 (GATA)	IPR000679	ENSRNOG00000024998	T193042_2.00	Ensembl (2018-Dec-8)	Link out
NCBI Gene Info: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein domain specific binding activity. Predicted to be involved in several processes, including hair follicle development; negative regulation of transcription by RNA polymerase II; and regulation of chondrocyte differentiation. Predicted to act upstream of or within several processes, including chondrocyte differentiation; negative regulation of transcription, DNA-templated; and positive regulation of extrinsic apoptotic signaling pathway via death domain receptors. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of protein-containing complex. Human ortholog(s) of this gene implicated in osteochondrodysplasia; trichorhinophalangeal syndrome type I; and trichorhinophalangeal syndrome type III. Orthologous to human TRPS1 (transcriptional repressor GATA binding 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATAe M03761_2.00	Drosophila melanogaster	VHGATAAS	STTATCDB	SELEX Nitta et al.(2015) GATAe_1	0.822	0.629
GATAe M03762_2.00	Drosophila melanogaster	HGATAACNNNGTTATCD	HGATAACNNNGTTATCD	SELEX Nitta et al.(2015) GATAe_2	0.822	0.629
GATAe M03763_2.00	Drosophila melanogaster	HGATAAGNNNCTTATCD	HGATAAGNNNCTTATCD	SELEX Nitta et al.(2015) GATAe_3	0.822	0.629
GATAe M06208_2.00	Drosophila melanogaster	WGATAAG	CTTATCW	B1H Zhu et al.(2011) GATAe_SANGER_5_FBgn0038391	0.822	0.629
nit-2 M02017_2.00	Neurospora crassa	NNGATHNN	NNDATCNN	PBM Weirauch et al.(2014) pTH8624	0.808	0.543
nit-2 M10601_2.00	Neurospora crassa	DHGATA	TATCDH	Transfac Matys et al.(2006) F$NIT2_01	0.808	0.543
For this family, TFs with SR scores > 0.802* will likely have a similar motif*