Pavir.J03293 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J03293 T196760_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY

RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.853 0.972
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY

RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.853 0.972
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT

ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.812 0.917
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND

HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.812 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03293.1.p GATA 72 107

Links

Other GATA family TFs
Other Panicum virgatum TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29634.m002146 Ricinus communis 29634.m002146 I 0.853
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.867
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.867
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.867
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.867
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.862
Bo1g005530 Brassica oleracea Bo1g005530 I 0.842
Bo3g019610 Brassica oleracea Bo3g019610 I 0.811
Bo7g010220 Brassica oleracea Bo7g010220 I 0.812
Bo7g064860 Brassica oleracea Bo7g064860 I 0.853
Bo7g100580 Brassica oleracea Bo7g100580 I 0.853
Bo7g118030 Brassica oleracea Bo7g118030 I 0.853
Bo8g080330 Brassica oleracea Bo8g080330 I 0.853
Bo9g026020 Brassica oleracea Bo9g026020 I 0.807
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.812
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.853
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.853
Bra006851 Brassica rapa Bra006851 I 0.811
Bra010563 Brassica rapa Bra010563 I 0.848
Bra011695 Brassica rapa Bra011695 I 0.842
Bra012080 Brassica rapa Bra012080 I 0.822
Bra012883 Brassica rapa Bra012883 I 0.853
Bra017766 Brassica rapa Bra017766 I 0.853
Bra036854 Brassica rapa Bra036854 I 0.853
Bra037221 Brassica rapa Bra037221 I 0.812
Bra039614 Brassica rapa Bra039614 I 0.812
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.848
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.867
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.853
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.853
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.812
Carubv10017765m.g Capsella rubella Carubv10017765m.g I 0.853
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.853
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.853
Ca_02038 Cicer arietinum Ca_02038 I 0.853
Ca_16057 Cicer arietinum Ca_16057 I 0.867
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.853
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.853
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.853
Cla014435 Citrullus lanatus Cla014435 I 0.856
Cla014810 Citrullus lanatus Cla014810 I 0.853
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.853
Cucsa.127470 Cucumis sativus Cucsa.127470 I 0.856
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.853
F775_00859 Aegilops tauschii F775_00859 I 0.867
F775_42893 Aegilops tauschii F775_42893 I 0.848
GATA15 Oryza sativa OS05G0578900 I 0.862
GATA15 Oryza indica BGIOSGA020424 I 0.862
GATA18 Arabidopsis thaliana AT3G50870 I 0.853
GATA19 Arabidopsis thaliana AT4G36620 D 0.853
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.853
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.812
GATA20 Arabidopsis thaliana AT2G18380 D 0.812
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.853
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.852
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.853
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.842
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.853
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.853
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.853
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.853
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.867
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.814
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.811
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.819
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.867
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.867
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I 0.811
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.867
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.867
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.867
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.862
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.853
MDP0000253174 Malus domestica MDP0000253174 I 0.853
MDP0000310271 Malus domestica MDP0000310271 I 0.853
mgf023982m Mimulus guttatus mgf023982m I 0.853
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.867
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.848
MNP Vitis vinifera VIT_04s0023g01840 I 0.853
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.853
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.853
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.831
OB01G34710 Oryza brachyantha OB01G34710 I 0.867
OB05G34480 Oryza brachyantha OB05G34480 I 0.867
OBART01G25510 Oryza barthii OBART01G25510 I 0.867
OBART05G26150 Oryza barthii OBART05G26150 I 0.827
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.867
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.827
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.862
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.867
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.862
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.862
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.867
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.862
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.867
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.867
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.862
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.867
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.862
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.862
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.867
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.862
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.862
OS01G0662800 Oryza sativa OS01G0662800 I 0.867
OS05G0567900 Oryza sativa OS05G0567900 I 0.862
Pavir.Ca00998 Panicum virgatum Pavir.Ca00998 I 0.848
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.848
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.853
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.848
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.867
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.853
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.853
PK24471.1 Cannabis sativa PK24471.1 I 0.853
Pm026628 Prunus mume Pm026628 I 0.853
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.853
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.853
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.853
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.853
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.853
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.867
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.862
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.848
Si022366m.g Setaria italica Si022366m.g I 0.848
Si024214m.g Setaria italica Si024214m.g I 0.867
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.853
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.853
TCM_000376 Theobroma cacao TCM_000376 I 0.853
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.853
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.812
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.853
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.867
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.848