D917_03508 (Trichinella nativa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 D917_03508 T197440_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATAe
M03761_2.00
Drosophila melanogaster
VHGATAAS

STTATCDB
SELEX
Nitta et al.(2015)
GATAe_1
0.856 0.800
GATAe
M03762_2.00
Drosophila melanogaster
HGATAACNNNGTTATCD

HGATAACNNNGTTATCD
SELEX
Nitta et al.(2015)
GATAe_2
0.856 0.800
GATAe
M03763_2.00
Drosophila melanogaster
HGATAAGNNNCTTATCD

HGATAAGNNNCTTATCD
SELEX
Nitta et al.(2015)
GATAe_3
0.856 0.800
GATAe
M06208_2.00
Drosophila melanogaster
WGATAAG

CTTATCW
B1H
Zhu et al.(2011)
GATAe_SANGER_5_FBgn0038391
0.856 0.800
nit-2
M02017_2.00
Neurospora crassa
NNGATHNN

NNDATCNN
PBM
Weirauch et al.(2014)
pTH8624
0.822 0.657
nit-2
M10601_2.00
Neurospora crassa
DHGATA

TATCDH
Transfac
Matys et al.(2006)
F$NIT2_01
0.822 0.657
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_03508 GATA 289 323

Links

Other GATA family TFs
Other Trichinella nativa TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS03G0370250 Oryza sativa OS03G0370250 D 0.000
BGIOSGA026216 Oryza indica BGIOSGA026216 I 0.000
ORUFI03G19470 Oryza rufipogon ORUFI03G19470 I 0.000
ORUFI07G24680 Oryza rufipogon ORUFI07G24680 I 0.000
OS07G0636100 Oryza sativa OS07G0636100 I 0.000
Sb01g034370 Sorghum bicolor Sb01g034370 I 0.000
Sb02g040550 Sorghum bicolor Sb02g040550 I 0.000
Si030239m.g Setaria italica Si030239m.g I 0.000
Traes_2AS_8C5E619C6 Triticum aestivum Traes_2AS_8C5E619C6 I 0.000
Traes_2BS_EEE045515 Triticum aestivum Traes_2BS_EEE045515 I 0.000
Traes_2DS_6BAF1825F Triticum aestivum Traes_2DS_6BAF1825F I 0.000
Traes_4AS_928691B39 Triticum aestivum Traes_4AS_928691B39 I 0.000
Traes_4BS_96AE357C6 Triticum aestivum Traes_4BS_96AE357C6 I 0.000
Traes_4DL_21C202E37 Triticum aestivum Traes_4DL_21C202E37 I 0.000
TRIUR3_32773 Triticum urartu TRIUR3_32773 I 0.000
Pavir.Ba00022 Panicum virgatum Pavir.Ba00022 I 0.000
Pavir.Bb03462 Panicum virgatum Pavir.Bb03462 I 0.000
Pavir.Ib01769 Panicum virgatum Pavir.Ib01769 I 0.000
ORGLA07G0264000 Oryza glaberrima ORGLA07G0264000 I 0.000
ORGLA03G0177400 Oryza glaberrima ORGLA03G0177400 I 0.000
OPUNC07G22140 Oryza punctata OPUNC07G22140 I 0.000
BRADI1G20210 Brachypodium distachyon BRADI1G20210 I 0.000
BRADI1G61477 Brachypodium distachyon BRADI1G61477 I 0.000
F775_06570 Aegilops tauschii F775_06570 I 0.000
GRMZM2G026417 Zea mays GRMZM2G026417 I 0.000
GRMZM2G030458 Zea mays GRMZM2G030458 I 0.000
GRMZM2G075122 Zea mays GRMZM2G075122 I 0.000
GRMZM2G082318 Zea mays GRMZM2G082318 I 0.000
LPERR07G20450 Leersia perrieri LPERR07G20450 I 0.000
MLOC_10638 Hordeum vulgare MLOC_10638 I 0.000
OB07G29080 Oryza brachyantha OB07G29080 I 0.000
OBART07G23470 Oryza barthii OBART07G23470 I 0.000
OGLUM03G19400 Oryza glumaepatula OGLUM03G19400 I 0.000
OGLUM07G23550 Oryza glumaepatula OGLUM07G23550 I 0.000
OMERI03G17110 Oryza meridionalis OMERI03G17110 I 0.000
OMERI07G19920 Oryza meridionalis OMERI07G19920 I 0.000
ONIVA04G28640 Oryza nivara ONIVA04G28640 I 0.000
ONIVA07G23260 Oryza nivara ONIVA07G23260 I 0.000
Pavir.J23796 Panicum virgatum Pavir.J23796 I 0.000