tfcp2 (Danio rerio)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSDARG00000060306 T198954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA

TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.924 0.924
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH

DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.810 0.810
TFCP2L1
M10609_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.810 0.810
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH

DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.810 0.810
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN

NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.796 0.796
UBP1
M10614_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.796 0.796
UBP1
M10615_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.796 0.796
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH

DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.796 0.796
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.791 0.791
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.791 0.791
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB

VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.791 0.791
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000121618 Grainyhead 45 260

Links

Other Grainyhead family TFs
Other Danio rerio TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PDK_20s1421311g003 Phoenix dactylifera PDK_20s1421311g003 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
Carubv10015685m.g Capsella rubella Carubv10015685m.g N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Cagra.1158s0007 Capsella grandiflora Cagra.1158s0007 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bostr.19424s0023 Boechera stricta Bostr.19424s0023 N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
PK15082.1 Cannabis sativa PK15082.1 N 0.000
PK09018.1 Cannabis sativa PK09018.1 N 0.000
Thhalv10004053m.g Eutrema salsugineum Thhalv10004053m.g N 0.000
Thhalv10002541m.g Eutrema salsugineum Thhalv10002541m.g N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
PGSC0003DMG400022187 Solanum tuberosum PGSC0003DMG400022187 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
GSMUA_Achr8G03610_001 Musa acuminata GSMUA_Achr8G03610_001 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
Bra037509 Brassica rapa Bra037509 N 0.000
Bra036185 Brassica rapa Bra036185 N 0.000
Bra026077 Brassica rapa Bra026077 N 0.000
Bra020715 Brassica rapa Bra020715 N 0.000
Bra015156 Brassica rapa Bra015156 N 0.000
Bo9g009260 Brassica oleracea Bo9g009260 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bo2g149670 Brassica oleracea Bo2g149670 N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
SCL21 Arabidopsis thaliana AT2G04890 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
27613.m000642 Ricinus communis 27613.m000642 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
SCL21 Arabidopsis lyrata scaffold_303269.1 N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.000