CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10028176m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10028176m.g
T202372_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10028176m
GRAS
31
426
MEQLLLHCANAIESNDVTLAQQIIWVLNNLASPEGDSTQRLVSSFLRALISRAASKSPAFACLSVAAPAPSVSRKTLHRFSVIELAEFVDLTPWHRFGFIAANAAILDAVKGYSSVHIVDLSLTHCMQVPTLIDAMANKLHKQLPPLLKLTVIVSDDESYPPPLLGVSYEELGSKLVNFATTRNIAMEFRIISSSYSDGLSSLVEQLRNDPFVFNEALVVNCHMMLHYIPDQTLTSISNPPRTVFLKELRDLNPTIVTLIDEDADFTSTSLISRLRSLYNYMWIPYDTADVFLTCGSEQRQWYEADVSWKIDNVIAKEGAERVERLELKSRWFERMREAKFAGVGLGEAVATEAKTMLEEHATGWGMKRDVDEDDDVERLVLTWKGHSVVFASAWA
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0342s0029
Capsella grandiflora
Cagra.0342s0029
N
0.987
Bostr.0568s0167
Boechera stricta
Bostr.0568s0167
N
0.908
SCL16
Arabidopsis thaliana
AT5G67411
N
0.868
fgenesh1_pm.C_scaffold_8002175
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002175
N
0.839
Thhalv10005469m.g
Eutrema salsugineum
Thhalv10005469m.g
N
0.806
Bo7g063640
Brassica oleracea
Bo7g063640
N
0.785
Traes_2AS_E17243D52
Triticum aestivum
Traes_2AS_E17243D52
N
0.721