CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J37722
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.J37722
T203095_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J37722.1.p
GRAS
111
409
PPTHGSELLHDFHGRQGGPPEVRLTVVHDDNDYLANMRTLLSNEADKLNIPFQFSSVIGRLETLDFSNLRNTLDIKYGEAIAISCSLQMHRLLVVDDKVSCSGIGQLQKMANIAQLKQMASSVYSPASTLNYPQTPSPQCKTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVEALNYYAALFDCLHALVAANPRRADERARVERMILGEEIRNILVCEGVHRHERHERLSQWAMHMDRSGFDHVPLSFRAIWEGNQKLMSFGFSGCQSKVESDCLLLCWGSRHHYSISAWR
Pavir.J37722.2.p
GRAS
60
358
PPTHGSELLHDFHGRQGGPPEVRLTVVHDDNDYLANMRTLLSNEADKLNIPFQFSSVIGRLETLDFSNLRNTLDIKYGEAIAISCSLQMHRLLVVDDKVSCSGIGQLQKMANIAQLKQMASSVYSPASTLNYPQTPSPQCKTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVEALNYYAALFDCLHALVAANPRRADERARVERMILGEEIRNILVCEGVHRHERHERLSQWAMHMDRSGFDHVPLSFRAIWEGNQKLMSFGFSGCQSKVESDCLLLCWGSRHHYSISAWR
Pavir.J37722.3.p
GRAS
29
282
FMTSMGDKFSSVIGRLETLDFSNLRNTLDIKYGEAIAISCSLQMHRLLVVDDKVSCSGIGQLQKMANIAQLKQMASSVYSPASTLNYPQTPSPQCKTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVEALNYYAALFDCLHALVAANPRRADERARVERMILGEEIRNILVCEGVHRHERHERLSQWAMHMDRSGFDHVPLSFRAIWEGNQKLMSFGFSGCQSKVESDCLLLCWGSRHHYSISAWR
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J24605
Panicum virgatum
Pavir.J24605
N
0.873
Pavir.Hb01985
Panicum virgatum
Pavir.Hb01985
N
0.863
Si012421m.g
Setaria italica
Si012421m.g
N
0.760
ORGLA03G0402800
Oryza glaberrima
ORGLA03G0402800
N
0.706
OS12G0138166
Oryza sativa
OS12G0138166
N
0.701
BGIOSGA034522
Oryza indica
BGIOSGA034522
N
0.701