CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ATHB-22
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT2G36610
T204484_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.779
0.745
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.779
0.745
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.779
0.745
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.709
0.636
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.709
0.636
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.689
0.618
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.689
0.618
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.648
0.600
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.648
0.600
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.616
0.582
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.616
0.582
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.611
0.600
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.611
0.600
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.599
0.636
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02041_2.00
Homeodomain
1
63
KKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G36610.1
Homeodomain
71
133
KKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKN
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
275 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy