CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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KNAT4
(
Arabidopsis thaliana
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
AT5G11060
T204523_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.867
0.979
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST
ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.861
0.875
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN
NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.830
0.875
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721
0.479
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663
0.458
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663
0.458
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663
0.458
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663
0.458
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01238_2.00
Homeodomain
50
100
GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G11060.1
Homeodomain
317
367
GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Links
Other
Homeodomain
family TFs
Other
Arabidopsis thaliana
TFs
511 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy