Bra028820 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra028820 T205157_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.818 0.911
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.818 0.911
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.818 0.911
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.767 0.696
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.711 0.589
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.711 0.589
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.691 0.589
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.691 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028820.1-P Homeodomain 73 128

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AOL_s00006g402 Arthrobotrys oligospora AOL_s00006g402 N 0.000
CaO19.12333 Candida albicans CaO19.12333 N 0.000
CaO19.4869 Candida albicans CaO19.4869 N 0.000
CD36_09420 Candida dubliniensis CD36_09420 N 0.000
CIMG_00643 Coccidioides immitis CIMG_00643 N 0.000
CLUG_03835 Candida lusitaniae CLUG_03835 N 0.000
CLUG_03835 Clavispora lusitaniae CLUG_03835 N 0.000
CORT_0G00970 Candida orthopsilosis CORT_0G00970 N 0.000
CPAG_04289 Candida parapsilosis CPAG_04289 N 0.000
CPC735_056160 Coccidioides posadasii CPC735_056160 N 0.000
CTRG_03356 Candida tropicalis CTRG_03356 N 0.000
DEHA2D02992g Debaryomyces hansenii DEHA2D02992g N 0.000
DRE_00816 Drechslerella stenobrocha DRE_00816 N 0.000
estExt_fgeneshPB_pg.C_200193 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_200193 N 0.000
fgenesh1_pg.C_chr_3.1000427 Pichia stipitis fgenesh1_pg.C_chr_3.1000427 N 0.000
G210_5573 Candida maltosa G210_5573 N 0.000
GNLVRS01_PISO0I03308g Millerozyma farinosa GNLVRS01_PISO0I03308g N 0.000
GNLVRS01_PISO0J05091g Millerozyma farinosa GNLVRS01_PISO0J05091g N 0.000
GSTUM_00011353001 Tuber melanosporum GSTUM_00011353001 N 0.000
H072_372 Dactylellina haptotyla H072_372 N 0.000
LELG_03603 Lodderomyces elongisporus LELG_03603 N 0.000
PAS_chr1-4_0395 Komagataella pastoris PAS_chr1-4_0395 N 0.000
PGUG_05113 Meyerozyma guilliermondii PGUG_05113 N 0.000
PGUG_05113 Candida guilliermondii PGUG_05113 N 0.000
PICST_30840 Scheffersomyces stipitis PICST_30840 N 0.000
SPAPADRAFT_55830 Spathaspora passalidarum SPAPADRAFT_55830 N 0.000
UREG_00647 Uncinocarpus reesii UREG_00647 N 0.000
XP_002490521.1 Pichia pastoris XP_002490521.1 N 0.000
YALI0_E05555g Yarrowia lipolytica YALI0_E05555g N 0.000