CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCSAVG00000003530
(
Ciona savignyi
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSCSAVG00000003530
T208449_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA
TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.681
0.614
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR
YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.672
0.596
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN
NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.659
0.579
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS
SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.659
0.579
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.659
0.579
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN
NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.659
0.579
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.659
0.579
HOXC13
M10680_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.659
0.579
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
0.659
0.579
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.659
0.579
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
0.659
0.561
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN
NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.659
0.561
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN
NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.659
0.561
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.659
0.561
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.659
0.561
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.659
0.561
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.659
0.561
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS
SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
0.659
0.561
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
0.659
0.561
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS
SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.659
0.561
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.659
0.561
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB
VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.659
0.561
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.659
0.561
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN
NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.659
0.561
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.659
0.561
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS
SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
0.659
0.561
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
0.659
0.561
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.659
0.561
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.659
0.561
HOXA13
M10653_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.659
0.561
HOXA13
M10654_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.659
0.561
HOXD13
M10689_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
0.659
0.561
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
0.659
0.561
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN
NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.659
0.561
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.659
0.561
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN
NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.659
0.561
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.659
0.561
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB
VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
0.659
0.561
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
0.659
0.561
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR
YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
0.659
0.544
Hoxd10
M00509_2.00
Mus musculus
NNNNNNNN
NNNNNNNN
PBM
Berger et al.(2008)
Hoxd10_2368
0.653
0.807
HOXD10
M05112_2.00
Homo sapiens
NKTTTATKRC
GYMATAAAMN
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_1
0.653
0.807
HOXD10
M05113_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXD10_eDBD_HT-SELEX_2
0.653
0.807
HOXD10
M05116_2.00
Homo sapiens
RGTCGTAAAAH
DTTTTACGACY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_1
0.653
0.807
HOXD10
M05117_2.00
Homo sapiens
RRYMATAAAAH
DTTTTATKRYY
SELEX
Yin et al.(2017)
HOXD10_FL_HT-SELEX_2
0.653
0.807
HOXD10
M10687_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q2
0.653
0.807
HOXD10
M10688_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD10_Q6
0.653
0.807
HOXD10
M05114_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_1
0.653
0.807
HOXD10
M05115_2.00
Homo sapiens
GTCGTAAAHN
NDTTTACGAC
SELEX
Yin et al.(2017)
HOXD10_eDBD_Methyl-HT-SELEX_2
0.653
0.807
HOXD10
M05118_2.00
Homo sapiens
VGTCGTAAAAH
DTTTTACGACB
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_1
0.653
0.807
HOXD10
M05119_2.00
Homo sapiens
DGYAATAAAAH
DTTTTATTRCH
SELEX
Yin et al.(2017)
HOXD10_FL_Methyl-HT-SELEX_2
0.653
0.807
Hoxa10
M00382_2.00
Mus musculus
NHWAYNNNN
NNNNRTWDN
PBM
Berger et al.(2008)
Hoxa10_2318
0.653
0.789
HOXA10
M05394_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_1
0.653
0.789
HOXA10
M05395_2.00
Homo sapiens
NTTTTATKRCY
RGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_HT-SELEX_2
0.653
0.789
HOXA10
M05398_2.00
Homo sapiens
NRTCRTWAANN
NNTTWAYGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_1
0.653
0.789
HOXA10
M05399_2.00
Homo sapiens
NNTTWATKRCN
NGYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_HT-SELEX_2
0.653
0.789
Hoxa10
M09170_2.00
Mus musculus
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_MOUSE.H11MO.0.C
0.653
0.789
Hoxa10
M10763_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q5
0.653
0.789
HOXA10
M05396_2.00
Homo sapiens
NGTCGTAAAWN
NWTTTACGACN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_1
0.653
0.789
HOXA10
M05397_2.00
Homo sapiens
NTTTTATKRCB
VGYMATAAAAN
SELEX
Yin et al.(2017)
HOXA10_eDBD_Methyl-HT-SELEX_2
0.653
0.789
HOXA10
M05400_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_1
0.653
0.789
HOXA10
M05401_2.00
Homo sapiens
NNTTWATKRYN
NRYMATWAANN
SELEX
Yin et al.(2017)
HOXA10_FL_Methyl-HT-SELEX_2
0.653
0.789
HOXD13
M00298_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_R306W
0.651
0.544
Hoxc12
M00508_2.00
Mus musculus
NDTWAYNDBN
NVHNRTWAHN
PBM
Berger et al.(2008)
Hoxc12_3480
0.646
0.614
HOXC12
M03135_2.00
Homo sapiens
TTTTATTRY
RYAATAAAA
SELEX
Jolma et al.(2013)
HOXC12_1
0.646
0.614
HOXC12
M03136_2.00
Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY
SELEX
Jolma et al.(2013)
HOXC12_2
0.646
0.614
HOXC12
M05083_2.00
Homo sapiens
NGYAATAAAAN
NTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1
0.646
0.614
HOXC12
M05084_2.00
Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB
SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2
0.646
0.614
HOXC12
M05085_2.00
Homo sapiens
NGYAATAAAAH
DTTTTATTRCN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1
0.646
0.614
HOXC12
M05086_2.00
Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2
0.646
0.614
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW
WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
0.641
0.544
Hoxc10
M00421_2.00
Mus musculus
TTWATKAB
VTMATWAA
PBM
Berger et al.(2008)
Hoxc10_2779
0.635
0.772
HOXC10
M03228_2.00
Homo sapiens
DTTTWATKDB
VHMATWAAAH
SELEX
Jolma et al.(2013)
HOXC10_1
0.635
0.772
HOXC10
M03229_2.00
Homo sapiens
NNTTWATKRB
VYMATWAANN
SELEX
Jolma et al.(2013)
HOXC10_2
0.635
0.772
HOXC10
M03230_2.00
Homo sapiens
NWTTWAYGAB
VTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC10_3
0.635
0.772
Hoxc10
M03252_2.00
Mus musculus
DTTTWAYGAY
RTCRTWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_1
0.635
0.772
Hoxc10
M03253_2.00
Mus musculus
DTTTWATKRY
RYMATWAAAH
SELEX
Jolma et al.(2013)
Hoxc10_2
0.635
0.772
HOXC10
M05335_2.00
Homo sapiens
NDTTTATKRCN
NGYMATAAAHN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_1
0.635
0.772
HOXC10
M05336_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_HT-SELEX_2
0.635
0.772
HOXC10
M05339_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_1
0.635
0.772
HOXC10
M05340_2.00
Homo sapiens
NRTCGTAAAWN
NWTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_FL_HT-SELEX_2
0.635
0.772
HOXC10
M05337_2.00
Homo sapiens
NTTTTATKRCN
NGYMATAAAAN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_1
0.635
0.772
HOXC10
M05338_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC10_eDBD_Methyl-HT-SELEX_2
0.635
0.772
HOXC10
M05341_2.00
Homo sapiens
DTTTTATKRCH
DGYMATAAAAH
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_1
0.635
0.772
HOXC10
M05342_2.00
Homo sapiens
VGTCGTAAAHN
NDTTTACGACB
SELEX
Yin et al.(2017)
HOXC10_FL_Methyl-HT-SELEX_2
0.635
0.772
ceh-22
M00376_2.00
Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW
PBM
Berger et al.(2006)
Ceh-22
0.632
0.509
Nkx2-3
M00497_2.00
Mus musculus
NNRAGDRNN
NNYHCTYNN
PBM
Berger et al.(2008)
Nkx2-3_3435
0.630
0.509
NKX2-3
M05042_2.00
Homo sapiens
NNBAAGTGBN
NVCACTTVNN
SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX
0.630
0.509
NKX2-3
M05045_2.00
Homo sapiens
BNBAAGTGBN
NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX
0.630
0.509
NKX2-3
M05043_2.00
Homo sapiens
BNBAAGTGBN
NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1
0.630
0.509
NKX2-3
M05044_2.00
Homo sapiens
SDYAACGHB
VDCGTTRHS
SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2
0.630
0.509
NKX2-3
M05046_2.00
Homo sapiens
BNBAAGTGBN
NVCACTTVNV
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1
0.630
0.509
NKX2-3
M05047_2.00
Homo sapiens
SWYAACSHB
VDSGTTRWS
SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2
0.630
0.509
Hoxd11
M00493_2.00
Mus musculus
DDDNNNNN
NNNNNHHH
PBM
Berger et al.(2008)
Hoxd11_3873
0.624
0.667
HOXD11
M03139_2.00
Homo sapiens
RTCGTAAAWH
DWTTTACGAY
SELEX
Jolma et al.(2013)
HOXD11_1
0.624
0.667
HOXD11
M03140_2.00
Homo sapiens
TTTWATKRBH
DVYMATWAAA
SELEX
Jolma et al.(2013)
HOXD11_2
0.624
0.667
HOXD11
M05120_2.00
Homo sapiens
NRTCGTWAANNDTWAH
DTWAHNNTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_HT-SELEX
0.624
0.667
HOXD11
M05121_2.00
Homo sapiens
NRTCGTWAAHNDTWAH
DTWAHNDTTWACGAYN
SELEX
Yin et al.(2017)
HOXD11_eDBD_Methyl-HT-SELEX
0.624
0.667
Hoxa11
M00474_2.00
Mus musculus
NNHNHNNNN
NNNNDNDNN
PBM
Berger et al.(2008)
Hoxa11_2218
0.624
0.649
Hoxa11
M03274_2.00
Mus musculus
NNDTTWAYGABN
NVTCRTWAAHNN
SELEX
Jolma et al.(2013)
Hoxa11_1
0.624
0.649
Hoxa11
M03275_2.00
Mus musculus
NDTTWATKRNN
NNYMATWAAHN
SELEX
Jolma et al.(2013)
Hoxa11_2
0.624
0.649
HOXA11
M04897_2.00
Homo sapiens
VGTCGTAAAWH
DWTTTACGACB
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_1
0.624
0.649
HOXA11
M04898_2.00
Homo sapiens
DDTTWATKRSN
NSYMATWAAHH
SELEX
Yin et al.(2017)
HOXA11_eDBD_HT-SELEX_2
0.624
0.649
HOXA11
M04899_2.00
Homo sapiens
NRTCGTAAAWH
DWTTTACGAYN
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_1
0.624
0.649
HOXA11
M04900_2.00
Homo sapiens
DYTTTATKRCH
DGYMATAAARH
SELEX
Yin et al.(2017)
HOXA11_eDBD_Methyl-HT-SELEX_2
0.624
0.649
Hoxc11
M00390_2.00
Mus musculus
NTTWAYDDBN
NVHHRTWAAN
PBM
Berger et al.(2008)
Hoxc11_3718
0.624
0.632
HOXC11
M03131_2.00
Homo sapiens
NWTTWAYGAYH
DRTCRTWAAWN
SELEX
Jolma et al.(2013)
HOXC11_1
0.624
0.632
HOXC11
M03132_2.00
Homo sapiens
NWTTWATKRBH
DVYMATWAAWN
SELEX
Jolma et al.(2013)
HOXC11_2
0.624
0.632
HOXC11
M03133_2.00
Homo sapiens
DRTCGTWAAWN
NWTTWACGAYH
SELEX
Jolma et al.(2013)
HOXC11_3
0.624
0.632
HOXC11
M03134_2.00
Homo sapiens
NTTTTATKRBN
NVYMATAAAAN
SELEX
Jolma et al.(2013)
HOXC11_4
0.624
0.632
HOXC11
M05075_2.00
Homo sapiens
NDTTWACGAYN
NRTCGTWAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_1
0.624
0.632
HOXC11
M05076_2.00
Homo sapiens
NWTTWATKRCH
DGYMATWAAWN
SELEX
Yin et al.(2017)
HOXC11_eDBD_HT-SELEX_2
0.624
0.632
HOXC11
M05079_2.00
Homo sapiens
NRTCGTWAAHN
NDTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_1
0.624
0.632
HOXC11
M05080_2.00
Homo sapiens
NDTTWATKRSN
NSYMATWAAHN
SELEX
Yin et al.(2017)
HOXC11_FL_HT-SELEX_2
0.624
0.632
HOXC11
M05077_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_1
0.624
0.632
HOXC11
M05078_2.00
Homo sapiens
NDTTTATKRSN
NSYMATAAAHN
SELEX
Yin et al.(2017)
HOXC11_eDBD_Methyl-HT-SELEX_2
0.624
0.632
HOXC11
M05081_2.00
Homo sapiens
NRTCGTWAANN
NNTTWACGAYN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_1
0.624
0.632
HOXC11
M05082_2.00
Homo sapiens
NNTTWAYKRSN
NSYMRTWAANN
SELEX
Yin et al.(2017)
HOXC11_FL_Methyl-HT-SELEX_2
0.624
0.632
Hoxb9
M00410_2.00
Mus musculus
NTTWAYDDNN
NNHHRTWAAN
PBM
Berger et al.(2008)
Hoxb9_3413
0.621
0.772
HOXB9
M05289_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_1
0.621
0.772
HOXB9
M05290_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXB9_eDBD_HT-SELEX_2
0.621
0.772
HOXB9
M05291_2.00
Homo sapiens
GTCGTAAAHB
VDTTTACGAC
SELEX
Yin et al.(2017)
HOXB9_eDBD_Methyl-HT-SELEX
0.621
0.772
Hoxd9
M03282_2.00
Mus musculus
TTTWATKKB
VMMATWAAA
SELEX
Jolma et al.(2013)
Hoxd9_1
0.621
0.754
Hoxd9
M03283_2.00
Mus musculus
DWTTWATKRY
RYMATWAAWH
SELEX
Jolma et al.(2013)
Hoxd9_2
0.621
0.754
Hoxd9
M03284_2.00
Mus musculus
DTTWAYGRB
VYCRTWAAH
SELEX
Jolma et al.(2013)
Hoxd9_3
0.621
0.754
HOXC9
M05331_2.00
Homo sapiens
GTCGTAAAAN
NTTTTACGAC
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_1
0.621
0.754
HOXC9
M05332_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_HT-SELEX_2
0.621
0.754
HOXD9
M05104_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_1
0.621
0.754
HOXD9
M05105_2.00
Homo sapiens
RTCRTAAAWN
NWTTTAYGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_HT-SELEX_2
0.621
0.754
HOXD9
M05108_2.00
Homo sapiens
RTCGTAAAWN
NWTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_1
0.621
0.754
HOXD9
M05109_2.00
Homo sapiens
NTTTTATKRC
GYMATAAAAN
SELEX
Yin et al.(2017)
HOXD9_FL_HT-SELEX_2
0.621
0.754
HOXC9
M09161_2.00
Homo sapiens
HTTWATKGCH
DGCMATWAAD
Misc
Kulakovskiy et al.(2013)
HXC9_HUMAN.H11MO.0.C
0.621
0.754
HOXD9
M10686_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD9_Q2
0.621
0.754
HOXC9
M05333_2.00
Homo sapiens
RTCGTAAAHN
NDTTTACGAY
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_1
0.621
0.754
HOXC9
M05334_2.00
Homo sapiens
NTTTWATKRC
GYMATWAAAN
SELEX
Yin et al.(2017)
HOXC9_FL_Methyl-HT-SELEX_2
0.621
0.754
HOXD9
M05106_2.00
Homo sapiens
NNTTWATKRC
GYMATWAANN
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_1
0.621
0.754
HOXD9
M05107_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_eDBD_Methyl-HT-SELEX_2
0.621
0.754
HOXD9
M05110_2.00
Homo sapiens
RTCGTAAANN
NNTTTACGAY
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_1
0.621
0.754
HOXD9
M05111_2.00
Homo sapiens
NDTTWATKRC
GYMATWAAHN
SELEX
Yin et al.(2017)
HOXD9_FL_Methyl-HT-SELEX_2
0.621
0.754
Hoxa9
M00475_2.00
Mus musculus
NNDDBNNN
NNNVHHNN
PBM
Berger et al.(2008)
Hoxa9_2622
0.621
0.737
HOXA9
M03085_2.00
Homo sapiens
NNDTTWAYGAYN
NRTCRTWAAHNN
SELEX
Jolma et al.(2013)
HOXA10_1
0.621
0.737
HOXA9
M03086_2.00
Homo sapiens
NDTTWATKRYN
NRYMATWAAHN
SELEX
Jolma et al.(2013)
HOXA10_2
0.621
0.737
HOXA9
M04932_2.00
Homo sapiens
NNDWWABKRC
GYMVTWWHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_1
0.621
0.737
HOXA9
M04933_2.00
Homo sapiens
NNDTWAYGRB
VYCRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_HT-SELEX_2
0.621
0.737
Hoxa9
M08138_2.00
Mus musculus
TGATTKATKRB
VYMATMAATCA
ChIP-seq
Mathelier et al.(2014)
MA0594.1
0.621
0.737
HOXA9
M09130_2.00
Homo sapiens
DCATAAAYYRBH
DVYRRTTTATGH
Misc
Kulakovskiy et al.(2013)
HXA10_HUMAN.H11MO.0.C
0.621
0.737
HOXA9
M09131_2.00
Homo sapiens
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_HUMAN.H11MO.0.B
0.621
0.737
Hoxa9
M09203_2.00
Mus musculus
HHATAAATCAH
DTGATTTATDD
Misc
Kulakovskiy et al.(2013)
HXA9_MOUSE.H11MO.0.B
0.621
0.737
Hoxa9
M09575_2.00
Mus musculus
WGATTKATDRBY
RVYHATMAATCW
Misc
Heinz et al.(2010)
HSC-Hoxa9_GSE33509
0.621
0.737
HOXA9
M10642_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA10_Q6
0.621
0.737
HOXA9
M10643_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_04
0.621
0.737
HOXA9
M10644_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5_01
0.621
0.737
HOXA9
M10645_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA9_Q5
0.621
0.737
HOXA9
M04934_2.00
Homo sapiens
NNDTWAYKRC
GYMRTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_1
0.621
0.737
HOXA9
M04935_2.00
Homo sapiens
NNDTWACGAY
RTCGTWAHNN
SELEX
Yin et al.(2017)
HOXA9_FL_Methyl-HT-SELEX_2
0.621
0.737
NKX2-5
M00323_2.00
Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN
PBM
Barrera et al.(2016)
NKX2-5_REF
0.618
0.491
Nkx2-5
M00404_2.00
Mus musculus
NNNRAGDRBN
NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-5_3436
0.618
0.491
NKX2-5
M05346_2.00
Homo sapiens
BHYAAGTGBN
NVCACTTRDV
SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX
0.618
0.491
Nkx2-5
M02686_2.00
Mus musculus
WTAAKWK
MWMTTAW
SELEX
Mathelier et al.(2014)
MA0063.1
0.618
0.491
Nkx2-5
M08136_2.00
Mus musculus
SYTGAGWGSYH
DRSCWCTCARS
ChIP-seq
Mathelier et al.(2014)
MA0503.1
0.618
0.491
NKX2-5
M09163_2.00
Homo sapiens
BKRAGWGV
BCWCTYMV
Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B
0.618
0.491
Nkx2-5
M09177_2.00
Mus musculus
NBYBRAGTGS
SCACTYVRVN
Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A
0.618
0.491
Nkx2-5
M09567_2.00
Mus musculus
HBRAGWGBNN
NNVCWCTYVD
Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529
0.618
0.491
NKX2-5
M10742_2.00
Homo sapiens
TYAAGTG
CACTTRA
Transfac
Matys et al.(2006)
V$NKX25_01
0.618
0.491
NKX2-5
M10743_2.00
Homo sapiens
CWTAATTV
BAATTAWG
Transfac
Matys et al.(2006)
V$NKX25_02
0.618
0.491
NKX2-5
M10744_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q5
0.618
0.491
NKX2-5
M10745_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX25_Q6
0.618
0.491
NKX2-5
M00321_2.00
Homo sapiens
HNAAGTRBNN
NNVYACTTND
PBM
Barrera et al.(2016)
NKX2-5_R161P
0.618
0.491
NKX2-5
M00324_2.00
Homo sapiens
NHNNNNN
NNNNNDN
PBM
Barrera et al.(2016)
NKX2-5_T178M
0.618
0.491
NKX2-5
M05347_2.00
Homo sapiens
BTYAAGTGGN
NCCACTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1
0.618
0.491
NKX2-5
M05348_2.00
Homo sapiens
BTYAACGAB
VTCGTTRAV
SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2
0.618
0.491
NKX2-5
M00322_2.00
Homo sapiens
NNNRNNN
NNNYNNN
PBM
Barrera et al.(2016)
NKX2-5_R190C
0.618
0.474
ceh-24
M02181_2.00
Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN
PBM
Weirauch et al.(2014)
pTH6327
0.618
0.456
tin
M00559_2.00
Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN
PBM
Busser et al.(2012a)
Tin
0.618
0.491
tin
M03809_2.00
Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV
SELEX
Nitta et al.(2015)
tin_1
0.618
0.491
tin
M06284_2.00
Drosophila melanogaster
BTYAAGTG
CACTTRAV
B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110
0.618
0.491
tin
M06285_2.00
Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV
B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110
0.618
0.491
tin
M06286_2.00
Drosophila melanogaster
BWYAAGTR
YACTTRWV
B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110
0.618
0.491
tin
M08421_2.00
Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH
ChIP-chip
Mathelier et al.(2014)
MA0247.2
0.618
0.491
Nkx2-6
M00496_2.00
Mus musculus
HYAAGTRBNN
NNVYACTTRD
PBM
Berger et al.(2008)
Nkx2-6_3437
0.618
0.456
ceh-28
M08210_2.00
Caenorhabditis elegans
AATCGATW
WATCGATT
ChIP-seq
Contrino et al.(2012)
Mw138
0.616
0.474
Hoxc9
M00470_2.00
Mus musculus
NGTAATWAAN
NTTWATTACN
PBM
Berger et al.(2008)
Hoxc9_2367
0.613
0.737
Hoxc9
M08137_2.00
Mus musculus
NWGATTTATDGSH
DSCHATAAATCWN
ChIP-seq
Mathelier et al.(2014)
MA0485.1
0.613
0.737
Hoxc9
M09574_2.00
Mus musculus
TGATTTATDGCH
DGCHATAAATCA
Misc
Heinz et al.(2010)
Ainv15-Hoxc9_GSE21812
0.613
0.737
hox12
M02075_2.00
Ciona intestinalis
TTWAYKAY
RTMRTWAA
PBM
Weirauch et al.(2014)
pTH6299
0.613
0.649
Nkx2-9
M00520_2.00
Mus musculus
NNNRAGDRBN
NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-9_3082
0.611
0.491
Nkx2-9
M00800_2.00
Mus musculus
NNRAGDRBNN
NNVYHCTYNN
PBM
Weirauch et al.(2013)
pTH2842
0.611
0.491
Nkx2-9
M09215_2.00
Mus musculus
BTCAAGKRB
VYMCTTGAV
Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C
0.611
0.491
Meox1
M00384_2.00
Mus musculus
NTRATKRNN
NNYMATYAN
PBM
Berger et al.(2008)
Meox1_2310
0.611
0.614
MEOX1
M03077_2.00
Homo sapiens
NNTAATTASN
NSTAATTANN
SELEX
Jolma et al.(2013)
MEOX1_1
0.611
0.614
MEOX1
M04901_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1
0.611
0.614
MEOX1
M04902_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2
0.611
0.614
MEOX1
M04903_2.00
Homo sapiens
NTAAYGWB
VWCRTTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1
0.611
0.614
MEOX1
M04904_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2
0.611
0.614
Mnx1
M00388_2.00
Mus musculus
NTAATBDNNN
NNNHVATTAN
PBM
Berger et al.(2008)
Hlxb9_3422
0.610
0.614
MNX1
M03143_2.00
Homo sapiens
NHTAATTRNH
DNYAATTADN
SELEX
Jolma et al.(2013)
MNX1_1
0.610
0.614
MNX1
M05126_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX
0.610
0.614
MNX1
M05127_2.00
Homo sapiens
HTAAYGHB
VDCRTTAD
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1
0.610
0.614
MNX1
M05128_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2
0.610
0.614
vnd
M06551_2.00
Drosophila melanogaster
WYTCAAGTR
YACTTGARW
B1H
Mathelier et al.(2014)
MA0253.1
0.610
0.491
vnd
M06377_2.00
Drosophila melanogaster
WYTCAAGTR
YACTTGARW
B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986
0.610
0.491
vnd
M06378_2.00
Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM
B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986
0.610
0.491
vnd
M06379_2.00
Drosophila melanogaster
BTBAAGTR
YACTTVAV
B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986
0.610
0.491
vnd
M09683_2.00
Drosophila melanogaster
TCAAGTGB
VCACTTGA
Misc
Kulakovskiy et al.(2009)
vnd
0.610
0.491
Nkx2-2
M00438_2.00
Mus musculus
NNNRAGDRN
NYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-2_2823
0.610
0.474
Nkx2-2
M09190_2.00
Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN
Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A
0.610
0.474
NKX2-2
M10681_2.00
Homo sapiens
WTAAGTRBTT
AAVYACTTAW
Transfac
Matys et al.(2006)
V$NKX22_01
0.610
0.474
NKX2-2
M10682_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3_01
0.610
0.474
NKX2-2
M10683_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3
0.610
0.474
Abd-B
M00554_2.00
Drosophila melanogaster
NWTWAYDDNN
NNHHRTWAWN
PBM
Busser et al.(2012a)
Abd-B
0.607
0.667
Abd-B
M03772_2.00
Drosophila melanogaster
DRTCRTAAAWH
DWTTTAYGAYH
SELEX
Nitta et al.(2015)
Abd-B_1
0.607
0.667
Abd-B
M03773_2.00
Drosophila melanogaster
DTTTTATKRCY
RGYMATAAAAH
SELEX
Nitta et al.(2015)
Abd-B_2
0.607
0.667
Abd-B
M03774_2.00
Drosophila melanogaster
NKCARYAACGACYW
WRGTCGTTRYTGMN
SELEX
Nitta et al.(2015)
Abd-B_3
0.607
0.667
Abd-B
M03775_2.00
Drosophila melanogaster
DTTTWATGKSTTTY
RAAASMCATWAAAH
SELEX
Nitta et al.(2015)
Abd-B_4
0.607
0.667
Abd-B
M06476_2.00
Drosophila melanogaster
TTTATKR
YMATAAA
B1H
Mathelier et al.(2014)
MA0165.1
0.607
0.667
Abd-B
M06211_2.00
Drosophila melanogaster
YCATAAAA
TTTTATGR
B1H
Zhu et al.(2011)
Abd-B_FlyReg_FBgn0000015
0.607
0.667
Abd-B
M09672_2.00
Drosophila melanogaster
YMATAAAAHH
DDTTTTATKR
Misc
Kulakovskiy et al.(2009)
Abd-B
0.607
0.667
Abd-B
M10779_2.00
Drosophila melanogaster
VSNTTDATKRCNNN
NNNGYMATHAANSB
Transfac
Matys et al.(2006)
I$ABDB_01
0.607
0.667
Abd-B
M10780_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$ABDB_Q6
0.607
0.667
Q7M3U4_ACRFO
M02212_2.00
Acropora formosa
NNBTAWTTDNN
NNHAAWTAVNN
PBM
Weirauch et al.(2014)
pTH6498
0.606
0.614
scro
M03854_2.00
Drosophila melanogaster
NNBRMGTGB
VCACKYVNN
SELEX
Nitta et al.(2015)
scro_1
0.606
0.474
Nkx2-1
M00385_2.00
Mus musculus
NNRAGDRN
NYHCTYNN
PBM
Berger et al.(2008)
Titf1_1722
0.606
0.456
Nkx2-4
M00514_2.00
Mus musculus
NNRAGDRBNN
NNVYHCTYNN
PBM
Berger et al.(2008)
Nkx2-4_3074
0.606
0.456
NKX2-1
M09146_2.00
Homo sapiens
BTKGAGWGBN
NVCWCTCMAV
Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A
0.606
0.456
Nkx2-1
M09171_2.00
Mus musculus
NBTKGAGWGB
VCWCTCMAVN
Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A
0.606
0.456
Nkx2-1
M09563_2.00
Mus musculus
BTBRAGWGBH
DVCWCTYVAV
Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252
0.606
0.456
NKX2-1
M10694_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TITF1_Q3
0.606
0.456
NKX2-1
M10695_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5_01
0.606
0.456
NKX2-1
M10696_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5
0.606
0.456
NKX2-1
M10697_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q6
0.606
0.456
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN
NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.605
0.596
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.605
0.596
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC
GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.605
0.596
Bsx
M00516_2.00
Mus musculus
NTAAYBDNN
NNHVRTTAN
PBM
Berger et al.(2008)
Bsx_3483
0.603
0.526
bsh
M02113_2.00
Drosophila melanogaster
NNTAAYBDNN
NNHVRTTANN
PBM
Weirauch et al.(2014)
pTH6569
0.603
0.526
BSX
M03235_2.00
Homo sapiens
NTAATBRN
NYVATTAN
SELEX
Jolma et al.(2013)
BSX_1
0.603
0.526
bsh
M03786_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
bsh_1
0.603
0.526
bsh
M03787_2.00
Drosophila melanogaster
TAATTRVWTAATKR
YMATTAWBYAATTA
SELEX
Nitta et al.(2015)
bsh_2
0.603
0.526
bsh
M03788_2.00
Drosophila melanogaster
NTAATBRN
NYVATTAN
SELEX
Nitta et al.(2015)
bsh_3
0.603
0.526
BSX
M05377_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1
0.603
0.526
BSX
M05378_2.00
Homo sapiens
BTAATBRV
BYVATTAV
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2
0.603
0.526
bsh
M06483_2.00
Drosophila melanogaster
YTAATBR
YVATTAR
B1H
Mathelier et al.(2014)
MA0214.1
0.603
0.526
bsh
M06231_2.00
Drosophila melanogaster
HYTAATBRV
BYVATTARD
B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529
0.603
0.526
bsh
M06232_2.00
Drosophila melanogaster
NTAATKR
YMATTAN
B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529
0.603
0.526
BSX
M05379_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1
0.603
0.526
BSX
M05380_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2
0.603
0.526
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.601
0.596
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA
TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.601
0.596
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH
DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.601
0.596
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.601
0.596
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC
GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.601
0.596
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN
NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.601
0.596
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH
DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.601
0.596
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB
VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.601
0.596
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH
DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.601
0.596
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH
DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.601
0.596
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN
NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.601
0.596
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN
NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.601
0.596
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.601
0.579
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.601
0.579
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.601
0.579
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.601
0.579
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.601
0.579
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.601
0.579
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.601
0.579
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.601
0.579
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.601
0.579
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.601
0.579
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN
NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.601
0.561
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB
VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.601
0.561
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN
NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.601
0.561
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.601
0.561
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.601
0.561
CDX1
M10670_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.601
0.561
CDX1
M10671_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.601
0.561
CDX1
M10761_2.00
Gallus gallus
BDBWAAK
MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.601
0.561
CDX1
M10762_2.00
Gallus gallus
WWWWMYR
YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.601
0.561
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB
VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.601
0.561
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000005910
Homeodomain
245
301
RKKRVPYTKYQLLELEKEFHFNQYLSRERRLEVAKSVKLSDRQVKIWFQNRRMKWKK
ENSCSAVP00000005911
Homeodomain
148
204
RKKRVPYTKYQLLELEKEFHFNQYLSRERRLEVAKSVKLSDRQVKIWFQNRRMKWKK
Links
Other
Homeodomain
family TFs
Other
Ciona savignyi
TFs
2301 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy