hnf1bb (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000022295 T208564_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.865 0.945
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.865 0.945
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.865 0.945
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.865 0.945
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.865 0.945
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.865 0.945
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.864 0.964
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.864 0.964
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.864 0.964
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.864 0.964
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.864 0.964
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.864 0.964
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.864 0.964
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.864 0.964
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.859 0.927
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.859 0.927
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.859 0.927
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638 0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638 0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638 0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638 0.382
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000038789 Homeodomain 245 320
ENSDARP00000125092 Homeodomain 245 320

Links

Other Homeodomain family TFs
Other Danio rerio TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAH42217 Xenopus laevis AAH42217 I 0.000
AAI30161 Xenopus laevis AAI30161 I 0.000
AALB005039 Anopheles albimanus AALB005039 I 0.000
Aan_R001440 Calypte anna Aan_R001440 I 0.000
Aan_R014295 Calypte anna Aan_R014295 I 0.000
AARA007412 Anopheles arabiensis AARA007412 I 0.000
ACHR003797 Anopheles christyi ACHR003797 I 0.000
ACOM024661 Anopheles coluzzii ACOM024661 I 0.000
ACUA007180 Anopheles culicifacies ACUA007180 I 0.000
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.000
AEPI000589 Anopheles epiroticus AEPI000589 I 0.000
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.000
AFUN005441 Anopheles funestus AFUN005441 I 0.000
AGAP006108 Anopheles gambiae AGAP006108 I 0.000
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.000
AMEC011905 Anopheles melas AMEC011905 I 0.000
AMEM010049 Anopheles merus AMEM010049 I 0.000
AMIN009954 Anopheles minimus AMIN009954 I 0.000
AQUA011660 Anopheles quadriannulatus AQUA011660 I 0.000
ASTEI02878 Anopheles stephensi ASTEI02878 I 0.000
Bm3781 Brugia malayi Bm3781 I 0.000
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.000
CAA42778 Xenopus laevis CAA42778 I 0.000
CapteG105284 Capitella teleta CapteG105284 I 0.000
CapteG121832 Capitella teleta CapteG121832 I 0.000
CapteG166603 Capitella teleta CapteG166603 I 0.000
CapteG48958 Capitella teleta CapteG48958 I 0.000
CapteG58124 Capitella teleta CapteG58124 I 0.000
CLEC013418 Cimex lectularius CLEC013418 I 0.000
Cmyd_10000339 Chelonia mydas Cmyd_10000339 I 0.000
Cmyd_10002115 Chelonia mydas Cmyd_10002115 I 0.000
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.000
CpipJ_CPIJ002248 Culex pipiens CpipJ_CPIJ002248 I 0.000
D918_04890 Trichuris suis D918_04890 I 0.000
DME_0000984901 Dracunculus medinensis DME_0000984901 I 0.000
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.000
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.000
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.000
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.000
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.000
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.000
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.000
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.000
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.000
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.000
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.000
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.000
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.000
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.000
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.000
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.000
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.000
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.000
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.000
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.000
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.000
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.000
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.000
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.000
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.000
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.000
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I 0.000
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.000
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.000
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.000
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.000
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.000
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.000
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.000
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.000
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.000
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.000
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 I 0.000
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 I 0.000
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I 0.000
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 I 0.000
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.000
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.000
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.000
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.000
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.000
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.000
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.000
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.000
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.000
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.000
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.000
ENSPPYG00000001466 Pongo abelii ENSPPYG00000001466 I 0.000
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.000
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.000
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.000
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.000
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.000
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.000
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.000
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.000
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.000
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.000
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.000
HHAL001434-PA Halyomorpha halys HHAL001434-PA I 0.000
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.000
LOAG_17966 Loa loa LOAG_17966 I 0.000
MDOA013639 Musca domestica MDOA013639 I 0.000
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.000
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.000
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.000
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.000
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.000
PHUM156710 Pediculus humanus PHUM156710 I 0.000
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.000
RPRC001993 Rhodnius prolixus RPRC001993 I 0.000
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.000
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.000
T265_06248 Opisthorchis viverrini T265_06248 I 0.000
Tal_R003478 Tyto alba Tal_R003478 I 0.000
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.000
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.000
ybx1 Oryzias latipes ENSORLG00000004225 I 0.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.000
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.000
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.000
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.000
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.000
Ybx1 Mus musculus ENSMUSG00000028639 I 0.000
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.000
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.000
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.000
YBX1 Canis familiaris ENSCAFG00000002541 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.000
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.000
YBX1 Homo sapiens ENSG00000065978 D 0.000
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.000
ybx1 Danio rerio ENSDARG00000004757 I 0.000
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.000
YBX1 Gallus gallus ENSGALG00000004848 I 0.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.000
YBX1 Bos taurus ENSBTAG00000017368 I 0.000
ybx1.S Xenopus laevis XB-GENE-865405 I 0.000
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.000
YBX2 Microcebus murinus ENSMICG00000012453 I 0.000
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.000
YBX2 Sorex araneus ENSSARG00000000488 I 0.000
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.000
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.000
YBX3 Bos taurus ENSBTAG00000009663 I 0.000
YBX3 Felis catus ENSFCAG00000027748 I 0.000
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.000
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.000
YBX3 Equus caballus ENSECAG00000013777 I 0.000
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.000
YBX3 Echinops telfairi ENSETEG00000002557 I 0.000
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.000
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.000
YBX3 Canis familiaris ENSCAFG00000013401 I 0.000
YBX3 Homo sapiens ENSG00000060138 I 0.000
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.000
Ybx3 Mus musculus ENSMUSG00000030189 I 0.000
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.000
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.000
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.000
YBX3 Sus scrofa ENSSSCG00000000633 I 0.000
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.000
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.000