CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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meox2a
(
Danio rerio
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSDARG00000040911
T208610_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II and somite development. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in extraocular musculature; fin; and myotome. Orthologous to human MEOX2 (mesenchyme homeobox 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MEOX2
M03103_2.00
Homo sapiens
NNTRATKASN
NSTMATYANN
SELEX
Jolma et al.(2013)
MEOX2_1
0.867
1.000
MEOX2
M03104_2.00
Homo sapiens
NTAATTANVNTAATTAV
BTAATTANBNTAATTAN
SELEX
Jolma et al.(2013)
MEOX2_2
0.867
1.000
MEOX2
M03105_2.00
Homo sapiens
HTAATGATGATKAN
NTMATCATCATTAD
SELEX
Jolma et al.(2013)
MEOX2_3
0.867
1.000
Meox2
M03271_2.00
Mus musculus
NTAATKAN
NTMATTAN
SELEX
Jolma et al.(2013)
Meox2_1
0.867
1.000
MEOX2
M04988_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_1
0.867
1.000
MEOX2
M04989_2.00
Homo sapiens
NTVATBRV
BYVATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_HT-SELEX_2
0.867
1.000
Meox2
M10771_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEOX2_05
0.867
1.000
MEOX2
M04990_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_1
0.867
1.000
MEOX2
M04991_2.00
Homo sapiens
NTVATKRN
NYMATBAN
SELEX
Yin et al.(2017)
MEOX2_FL_Methyl-HT-SELEX_2
0.867
1.000
Meox1
M00384_2.00
Mus musculus
NTRATKRNN
NNYMATYAN
PBM
Berger et al.(2008)
Meox1_2310
0.822
0.965
MEOX1
M03077_2.00
Homo sapiens
NNTAATTASN
NSTAATTANN
SELEX
Jolma et al.(2013)
MEOX1_1
0.822
0.965
MEOX1
M04901_2.00
Homo sapiens
NTDAYGHB
VDCRTHAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1
0.822
0.965
MEOX1
M04902_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2
0.822
0.965
MEOX1
M04903_2.00
Homo sapiens
NTAAYGWB
VWCRTTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1
0.822
0.965
MEOX1
M04904_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2
0.822
0.965
btn
M03832_2.00
Drosophila melanogaster
NNTAATKANB
VNTMATTANN
SELEX
Nitta et al.(2015)
btn_1
0.785
0.807
btn
M03833_2.00
Drosophila melanogaster
VNTAATKABN
NVTMATTANB
SELEX
Nitta et al.(2015)
btn_2
0.785
0.807
btn
M06515_2.00
Drosophila melanogaster
DTAATKA
TMATTAH
B1H
Mathelier et al.(2014)
MA0215.1
0.785
0.807
btn
M06307_2.00
Drosophila melanogaster
NDTAATKA
TMATTAHN
B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949
0.785
0.807
btn
M06308_2.00
Drosophila melanogaster
HTAATKA
TMATTAD
B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949
0.785
0.807
vab-7
M02186_2.00
Caenorhabditis elegans
KTAATTAK
MTAATTAM
PBM
Weirauch et al.(2014)
pTH6104
0.781
0.596
Evx2
M00393_2.00
Mus musculus
NNTAAYNN
NNRTTANN
PBM
Berger et al.(2008)
Evx2_2645
0.781
0.614
Evx1
M00395_2.00
Mus musculus
NTAATBDNN
NNHVATTAN
PBM
Berger et al.(2008)
Evx1_3952
0.781
0.614
EVX1
M03102_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX1_1
0.781
0.614
EVX2
M03215_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX2_1
0.781
0.614
EVX1
M04985_2.00
Homo sapiens
VTAATKAB
VTMATTAB
SELEX
Yin et al.(2017)
EVX1_eDBD_HT-SELEX
0.781
0.614
EVX2
M05295_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_HT-SELEX
0.781
0.614
EVX2
M09158_2.00
Homo sapiens
NBTTTATKRCHNN
NNDGYMATAAAVN
Misc
Kulakovskiy et al.(2013)
EVX2_HUMAN.H11MO.0.A
0.781
0.614
Evx1
M09174_2.00
Mus musculus
WGATTTATDRBHN
NDVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
EVX1_MOUSE.H11MO.0.C
0.781
0.614
Evx2
M09173_2.00
Mus musculus
BTTTATKRCHBN
NVDGYMATAAAV
Misc
Kulakovskiy et al.(2013)
EVX2_MOUSE.H11MO.0.A
0.781
0.614
EVX2
M10736_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EVX2_04
0.781
0.614
EVX1
M04986_2.00
Homo sapiens
NTMATKAN
NTMATKAN
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_1
0.781
0.614
EVX1
M04987_2.00
Homo sapiens
HTWAYGAB
VTCRTWAD
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_2
0.781
0.614
EVX2
M05296_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_1
0.781
0.614
EVX2
M05297_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_2
0.781
0.614
ventx1.1.L
M02234_2.00
Xenopus laevis
NNNNVBNNNN
NNNNVBNNNN
PBM
Weirauch et al.(2014)
pTH6162
0.748
0.544
ventx1.2.S
M10805_2.00
Xenopus laevis
RSRMAAATWBBVS
SBBBWATTTKYSY
Transfac
Matys et al.(2006)
V$XVENT1_01
0.748
0.544
HOXA2
M02083_2.00
Homo sapiens
NNNDHHNNN
NNNDDHNNN
PBM
Weirauch et al.(2014)
pTH5887
0.738
0.684
Hoxa2
M00403_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxa2_3079
0.738
0.684
HOXA2
M03097_2.00
Homo sapiens
NBTAATKRNN
NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXA2_1
0.738
0.684
HOXB2
M03213_2.00
Homo sapiens
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
HOXB2_1
0.738
0.684
Hoxa2
M03251_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxa2_1
0.738
0.684
pb
M03872_2.00
Drosophila melanogaster
NTRAYKRY
RYMRTYAN
SELEX
Nitta et al.(2015)
pb_1
0.738
0.684
HOXA2
M04962_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_HT-SELEX
0.738
0.684
HOXA2
M04965_2.00
Homo sapiens
NTAATKAB
VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_HT-SELEX
0.738
0.684
HOXB2
M05292_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXB2_eDBD_HT-SELEX
0.738
0.684
pb
M06545_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0238.1
0.738
0.684
pb
M06366_2.00
Drosophila melanogaster
BYTAATKA
TMATTARV
B1H
Zhu et al.(2011)
Pb_Cell_FBgn0051481
0.738
0.684
pb
M06367_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Pb_SOLEXA_FBgn0051481
0.738
0.684
Hoxa2
M09566_2.00
Mus musculus
DTGATKGATKDB
VHMATCMATCAH
Misc
Heinz et al.(2010)
mES-Hoxa2_Donaldson_et_al.
0.738
0.684
HOXA2
M04963_2.00
Homo sapiens
NTAATTAN
NTAATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_1
0.738
0.684
HOXA2
M04964_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_2
0.738
0.684
HOXA2
M04966_2.00
Homo sapiens
NTAATKAB
VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_1
0.738
0.684
HOXA2
M04967_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_2
0.738
0.684
HOXB2
M05293_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_1
0.738
0.684
HOXB2
M05294_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_2
0.738
0.684
eve
M00556_2.00
Drosophila melanogaster
NNTAATTARN
NYTAATTANN
PBM
Busser et al.(2012a)
Eve
0.736
0.579
eve
M02115_2.00
Drosophila melanogaster
NTAATNDNN
NNHNATTAN
PBM
Weirauch et al.(2014)
pTH6436
0.736
0.579
eve
M03794_2.00
Drosophila melanogaster
VYTAATKASN
NSTMATTARB
SELEX
Nitta et al.(2015)
eve_1
0.736
0.579
eve
M06486_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0221.1
0.736
0.579
eve
M06240_2.00
Drosophila melanogaster
DYTAATKA
TMATTARH
B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606
0.736
0.579
eve
M06241_2.00
Drosophila melanogaster
HKBTAAYNDTKY
RMAHNRTTAVMD
B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606
0.736
0.579
eve
M06242_2.00
Drosophila melanogaster
NYTAATKA
TMATTARN
B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606
0.736
0.579
eve
M09678_2.00
Drosophila melanogaster
NKHTAATKD
HMATTADMN
Misc
Kulakovskiy et al.(2009)
eve
0.736
0.579
eve
M10786_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$EVE_Q6
0.736
0.579
Mnx1
M00388_2.00
Mus musculus
NTAATBDNNN
NNNHVATTAN
PBM
Berger et al.(2008)
Hlxb9_3422
0.729
0.614
MNX1
M03143_2.00
Homo sapiens
NHTAATTRNH
DNYAATTADN
SELEX
Jolma et al.(2013)
MNX1_1
0.729
0.614
MNX1
M05126_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX
0.729
0.614
MNX1
M05127_2.00
Homo sapiens
HTAAYGHB
VDCRTTAD
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1
0.729
0.614
MNX1
M05128_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2
0.729
0.614
exex
M03871_2.00
Drosophila melanogaster
NNNNYAATTNNYDN
NHRNNAATTRNNNN
SELEX
Nitta et al.(2015)
exex_1
0.729
0.596
exex
M06544_2.00
Drosophila melanogaster
BTAATTA
TAATTAV
B1H
Mathelier et al.(2014)
MA0224.1
0.729
0.596
exex
M06364_2.00
Drosophila melanogaster
TAATTAV
BTAATTA
B1H
Zhu et al.(2011)
Exex_Cell_FBgn0041156
0.729
0.596
exex
M06365_2.00
Drosophila melanogaster
TAATBR
YVATTA
B1H
Zhu et al.(2011)
Exex_SOLEXA_FBgn0041156
0.729
0.596
Dfd
M03784_2.00
Drosophila melanogaster
VNTAAYKRBN
NVYMRTTANB
SELEX
Nitta et al.(2015)
Dfd_1
0.725
0.632
Dfd
M03785_2.00
Drosophila melanogaster
VYTAATKAYN
NRTMATTARB
SELEX
Nitta et al.(2015)
Dfd_2
0.725
0.632
Dfd
M06481_2.00
Drosophila melanogaster
YTAATGA
TCATTAR
B1H
Mathelier et al.(2014)
MA0186.1
0.725
0.632
Dfd
M06226_2.00
Drosophila melanogaster
VYTAATGA
TCATTAAB
B1H
Zhu et al.(2011)
Dfd_Cell_FBgn0000439
0.725
0.632
Dfd
M06227_2.00
Drosophila melanogaster
TTAATKRY
RYMATTAA
B1H
Zhu et al.(2011)
Dfd_FlyReg_FBgn0000439
0.725
0.632
Dfd
M06228_2.00
Drosophila melanogaster
NBTAATKR
YMATTAVN
B1H
Zhu et al.(2011)
Dfd_SOLEXA_FBgn0000439
0.725
0.632
Dfd
M09675_2.00
Drosophila melanogaster
TTAATKRB
VYMATTAA
Misc
Kulakovskiy et al.(2009)
Dfd
0.725
0.632
Dfd
M10784_2.00
Drosophila melanogaster
NNNNRKTAATNNNNNN
NNNNNNATTAMYNNNN
Transfac
Matys et al.(2006)
I$DFD_01
0.725
0.632
Bsx
M00516_2.00
Mus musculus
NTAAYBDNN
NNHVRTTAN
PBM
Berger et al.(2008)
Bsx_3483
0.701
0.509
bsh
M02113_2.00
Drosophila melanogaster
NNTAAYBDNN
NNHVRTTANN
PBM
Weirauch et al.(2014)
pTH6569
0.701
0.509
BSX
M03235_2.00
Homo sapiens
NTAATBRN
NYVATTAN
SELEX
Jolma et al.(2013)
BSX_1
0.701
0.509
bsh
M03786_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
bsh_1
0.701
0.509
bsh
M03787_2.00
Drosophila melanogaster
TAATTRVWTAATKR
YMATTAWBYAATTA
SELEX
Nitta et al.(2015)
bsh_2
0.701
0.509
bsh
M03788_2.00
Drosophila melanogaster
NTAATBRN
NYVATTAN
SELEX
Nitta et al.(2015)
bsh_3
0.701
0.509
BSX
M05377_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_1
0.701
0.509
BSX
M05378_2.00
Homo sapiens
BTAATBRV
BYVATTAV
SELEX
Yin et al.(2017)
BSX_eDBD_HT-SELEX_2
0.701
0.509
bsh
M06483_2.00
Drosophila melanogaster
YTAATBR
YVATTAR
B1H
Mathelier et al.(2014)
MA0214.1
0.701
0.509
bsh
M06231_2.00
Drosophila melanogaster
HYTAATBRV
BYVATTARD
B1H
Zhu et al.(2011)
Bsh_Cell_FBgn0000529
0.701
0.509
bsh
M06232_2.00
Drosophila melanogaster
NTAATKR
YMATTAN
B1H
Zhu et al.(2011)
Bsh_SOLEXA_FBgn0000529
0.701
0.509
BSX
M05379_2.00
Homo sapiens
NTAAYGHB
VDCRTTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_1
0.701
0.509
BSX
M05380_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
BSX_eDBD_Methyl-HT-SELEX_2
0.701
0.509
Q9BJW6_9CNID
M02215_2.00
Sarsia sp. Long Island Sound
NBTAATTAVN
NBTAATTAVN
PBM
Weirauch et al.(2014)
pTH6287
0.699
0.544
Q24780_9CNID
M02205_2.00
Eleutheria dichotoma
NNYTAATTAMN
NKTAATTARNN
PBM
Weirauch et al.(2014)
pTH6308
0.690
0.544
Hoxa4
M00383_2.00
Mus musculus
NTAATBDNN
NNHVATTAN
PBM
Berger et al.(2008)
Hoxa4_3426
0.680
0.632
HOXA4
M05381_2.00
Homo sapiens
NTAATKRY
RYMATTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_HT-SELEX
0.680
0.632
HOXA4
M10755_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA4_Q2
0.680
0.632
HOXA4
M05382_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA4_eDBD_Methyl-HT-SELEX
0.680
0.632
HOXC4
M00330_2.00
Homo sapiens
YTAATTRB
VYAATTAR
PBM
Barrera et al.(2016)
HOXC4_REF
0.680
0.614
Hoxa5
M00478_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Hoxa5_3415
0.680
0.614
Hoxb4
M00479_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Hoxb4_2627
0.680
0.614
Hoxb5
M00480_2.00
Mus musculus
NWDWTNNNN
NNNNAWHWN
PBM
Berger et al.(2008)
Hoxb5_3122
0.680
0.614
Hoxc4
M00530_2.00
Mus musculus
NWAATNDNN
NNHNATTWN
PBM
Berger et al.(2008)
Hoxc4_3491
0.680
0.614
HOXB5
M03125_2.00
Homo sapiens
NNKAATKRNN
NNYMATTMNN
SELEX
Jolma et al.(2013)
HOXB5_1
0.680
0.614
HOXA5
M04968_2.00
Homo sapiens
STAATKRS
SYMATTAS
SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX
0.680
0.614
HOXA5
M04971_2.00
Homo sapiens
NTMATKRB
VYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX
0.680
0.614
HOXB4
M05343_2.00
Homo sapiens
YTAATKAY
RTMATTAR
SELEX
Yin et al.(2017)
HOXB4_FL_HT-SELEX
0.680
0.614
HOXB5
M05051_2.00
Homo sapiens
NTAATKRV
BYMATTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX
0.680
0.614
HOXB5
M05054_2.00
Homo sapiens
STMATKAB
VTMATKAS
SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX
0.680
0.614
HOXC4
M05385_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_HT-SELEX
0.680
0.614
HOXD4
M05273_2.00
Homo sapiens
NTMATKRV
BYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_HT-SELEX
0.680
0.614
HOXD4
M05276_2.00
Homo sapiens
NTAATKRB
VYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_HT-SELEX
0.680
0.614
HOXB4
M09162_2.00
Homo sapiens
YTAATKRS
SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_HUMAN.H11MO.0.B
0.680
0.614
Hoxb4
M09204_2.00
Mus musculus
YTAATKRS
SYMATTAR
Misc
Kulakovskiy et al.(2013)
HXB4_MOUSE.H11MO.0.A
0.680
0.614
Hoxb4
M09576_2.00
Mus musculus
TGATDRATKRSN
NSYMATYHATCA
Misc
Heinz et al.(2010)
ES-Hoxb4_GSE34014
0.680
0.614
HOXA5
M10652_2.00
Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR
YSCHHHBHYCYYMATTABTVNDHVMVHYCN
Transfac
Matys et al.(2006)
V$HOX13_01
0.680
0.614
HOXA5
M08457_2.00
Homo sapiens
CDBWAATK
MATTWVHG
COMPILED
Mathelier et al.(2014)
MA0158.1
0.680
0.614
HOXC4
M00328_2.00
Homo sapiens
YTAATTAB
VTAATTAR
PBM
Barrera et al.(2016)
HOXC4_N178S
0.680
0.614
HOXC4
M00329_2.00
Homo sapiens
NTAATKRNN
NNYMATTAN
PBM
Barrera et al.(2016)
HOXC4_R158L
0.680
0.614
HOXA5
M04969_2.00
Homo sapiens
BTAATKRV
BYMATTAV
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1
0.680
0.614
HOXA5
M04970_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2
0.680
0.614
HOXA5
M04972_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1
0.680
0.614
HOXA5
M04973_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2
0.680
0.614
HOXB4
M05344_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_1
0.680
0.614
HOXB4
M05345_2.00
Homo sapiens
HTAAYKAB
VTMRTTAD
SELEX
Yin et al.(2017)
HOXB4_FL_Methyl-HT-SELEX_2
0.680
0.614
HOXB5
M05052_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1
0.680
0.614
HOXB5
M05053_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2
0.680
0.614
HOXB5
M05055_2.00
Homo sapiens
NTMATKAB
VTMATKAN
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1
0.680
0.614
HOXB5
M05056_2.00
Homo sapiens
HTAAYGAY
RTCRTTAD
SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2
0.680
0.614
HOXC4
M05386_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_1
0.680
0.614
HOXC4
M05387_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXC4_FL_Methyl-HT-SELEX_2
0.680
0.614
HOXD4
M05274_2.00
Homo sapiens
NTMATKRN
NYMATKAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_1
0.680
0.614
HOXD4
M05275_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_eDBD_Methyl-HT-SELEX_2
0.680
0.614
HOXD4
M05277_2.00
Homo sapiens
NTAATKRN
NYMATTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_1
0.680
0.614
HOXD4
M05278_2.00
Homo sapiens
NTAAYGAY
RTCRTTAN
SELEX
Yin et al.(2017)
HOXD4_FL_Methyl-HT-SELEX_2
0.680
0.614
Hoxc5
M00422_2.00
Mus musculus
NWRATND
HNATYWN
PBM
Berger et al.(2008)
Hoxc5_2630
0.679
0.614
Pdx1
M00446_2.00
Mus musculus
NWRAYNNN
NNNRTYWN
PBM
Berger et al.(2008)
Ipf1_3815
0.675
0.579
PDX1
M03155_2.00
Homo sapiens
NTAATTRNNNYTAATTRN
NYAATTARNNNYAATTAN
SELEX
Jolma et al.(2013)
PDX1_1
0.675
0.579
PDX1
M03156_2.00
Homo sapiens
BTAATKRN
NYMATTAV
SELEX
Jolma et al.(2013)
PDX1_2
0.675
0.579
PDX1
M05161_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
0.675
0.579
PDX1
M09147_2.00
Homo sapiens
TGATWGATK
MATCWATCA
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
0.675
0.579
Pdx1
M09192_2.00
Mus musculus
VYTAATGRB
VYCATTARB
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
0.675
0.579
Pdx1
M09571_2.00
Mus musculus
TGATTRATKR
YMATYAATCA
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
0.675
0.579
PDX1
M10699_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_01
0.675
0.579
PDX1
M10700_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_02
0.675
0.579
PDX1
M10701_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_03
0.675
0.579
PDX1
M10702_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_04
0.675
0.579
PDX1
M10703_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_05
0.675
0.579
PDX1
M10704_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
0.675
0.579
PDX1
M10705_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4
0.675
0.579
PDX1
M10706_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
0.675
0.579
PDX1
M10707_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5
0.675
0.579
PDX1
M10708_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q6
0.675
0.579
PDX1
M05162_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
0.675
0.579
PDX1
M05163_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
0.675
0.579
SPU_026099
M02175_2.00
Strongylocentrotus purpuratus
KTAATTRB
VYAATTAM
PBM
Weirauch et al.(2014)
pTH6140
0.675
0.561
VENTX
M02091_2.00
Homo sapiens
TTAATTAB
VTAATTAA
PBM
Weirauch et al.(2014)
pTH5490
0.672
0.561
VENTX
M00305_2.00
Homo sapiens
DTAATTRR
YYAATTAH
PBM
Barrera et al.(2016)
VENTX_REF
0.672
0.561
VENTX
M03169_2.00
Homo sapiens
YTAATBGNT
ANCVATTAR
SELEX
Jolma et al.(2013)
VENTX_1
0.672
0.561
VENTX
M03170_2.00
Homo sapiens
VSYTAATSGRWAAMCGATTAG
CTAATCGKTTWYCSATTARSB
SELEX
Jolma et al.(2013)
VENTX_2
0.672
0.561
VENTX
M05188_2.00
Homo sapiens
CGHTAATBG
CVATTADCG
SELEX
Yin et al.(2017)
VENTX_FL_HT-SELEX_1
0.672
0.561
VENTX
M05189_2.00
Homo sapiens
VNTAATBRNN
NNYVATTANB
SELEX
Yin et al.(2017)
VENTX_FL_HT-SELEX_2
0.672
0.561
VENTX
M05190_2.00
Homo sapiens
VHTAATKRNN
NNYMATTADB
SELEX
Yin et al.(2017)
VENTX_FL_Methyl-HT-SELEX
0.672
0.561
VENTX
M00303_2.00
Homo sapiens
NVTAATTANNN
NNNTAATTABN
PBM
Barrera et al.(2016)
VENTX_E101K
0.672
0.544
VENTX
M00304_2.00
Homo sapiens
NATAYATAB
VTATRTATN
PBM
Barrera et al.(2016)
VENTX_R143C
0.672
0.544
Scr
M03799_2.00
Drosophila melanogaster
BTAATKRB
VYMATTAV
SELEX
Nitta et al.(2015)
Scr_1
0.667
0.614
Scr
M06496_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0203.1
0.667
0.614
Scr
M06266_2.00
Drosophila melanogaster
HVYTAATKA
TMATTARBD
B1H
Zhu et al.(2011)
Scr_Cell_FBgn0003339
0.667
0.614
Scr
M06267_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Scr_SOLEXA_FBgn0003339
0.667
0.614
zen
M03805_2.00
Drosophila melanogaster
BTAATKRB
VYMATTAV
SELEX
Nitta et al.(2015)
zen_1
0.664
0.614
zen
M06500_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Mathelier et al.(2014)
MA0256.1
0.664
0.614
zen
M06276_2.00
Drosophila melanogaster
NBYTAATKA
TMATTARBN
B1H
Zhu et al.(2011)
Zen_Cell_FBgn0004053
0.664
0.614
zen
M06277_2.00
Drosophila melanogaster
AANWTWAWTG
CAWTWAWNTT
B1H
Zhu et al.(2011)
zen_FlyReg_FBgn0004053
0.664
0.614
zen
M06278_2.00
Drosophila melanogaster
NYTAATKA
TMATTARN
B1H
Zhu et al.(2011)
Zen_SOLEXA_FBgn0004053
0.664
0.614
zen2
M02118_2.00
Drosophila melanogaster
NNTAATKRNN
NNYMATTANN
PBM
Weirauch et al.(2014)
pTH5479
0.663
0.596
zen2
M03806_2.00
Drosophila melanogaster
BTAATKAS
STMATTAV
SELEX
Nitta et al.(2015)
zen2_1
0.663
0.596
zen2
M03807_2.00
Drosophila melanogaster
BTAATKWNNVRNNNNYBNNWMATTAV
BTAATKWNNVRNNNNYBNNWMATTAV
SELEX
Nitta et al.(2015)
zen2_2
0.663
0.596
zen2
M06501_2.00
Drosophila melanogaster
BTAATKA
TMATTAV
B1H
Mathelier et al.(2014)
MA0257.1
0.663
0.596
zen2
M06279_2.00
Drosophila melanogaster
HNBTAATKA
TMATTAVND
B1H
Zhu et al.(2011)
Zen2_Cell_FBgn0004054
0.663
0.596
zen2
M06280_2.00
Drosophila melanogaster
NNNTAATKRN
NYMATTANNN
B1H
Zhu et al.(2011)
zen2_SOLEXA_2_FBgn0004054
0.663
0.596
zen2
M06281_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
Zen2_SOLEXA_FBgn0004054
0.663
0.596
Q0N4M8_NEMVE
M02166_2.00
Nematostella vectensis
HTAATKAC
GTMATTAD
PBM
Weirauch et al.(2014)
pTH6215
0.660
0.596
lin-39
M08211_2.00
Caenorhabditis elegans
GATTGATG
CATCAATC
ChIP-seq
Contrino et al.(2012)
Mw154
0.660
0.632
lin-39
M09582_2.00
Caenorhabditis elegans
DTGATWRATK
MATYWATCAH
Misc
Heinz et al.(2010)
cElegans.L3-LIN39_modEncode
0.660
0.632
Hoxd3
M00531_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Hoxd3_1742
0.660
0.579
Hoxa3
M00172_2.00
Mus musculus
NTAATKRNNN
NNNYMATTAN
PBM
Badis et al.(2009)
Hoxa3_2783
0.660
0.579
Hoxa3
M00532_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxa3_2783
0.660
0.579
Hoxd3
M03287_2.00
Mus musculus
NNTAATKRNN
NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxd3_1
0.660
0.579
HOXD3
M05101_2.00
Homo sapiens
CTAATTAS
STAATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_HT-SELEX
0.660
0.579
HOXA3
M10651_2.00
Homo sapiens
SVTWNDDKB
VMHHNWABS
Transfac
Matys et al.(2006)
V$HOXA3_01
0.660
0.579
HOXD3
M05102_2.00
Homo sapiens
YTAAYGAY
RTCRTTAR
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_1
0.660
0.579
HOXD3
M05103_2.00
Homo sapiens
CTAATKAC
GTMATTAG
SELEX
Yin et al.(2017)
HOXD3_FL_Methyl-HT-SELEX_2
0.660
0.579
Hoxb3
M00504_2.00
Mus musculus
NTAATKRNN
NNYMATTAN
PBM
Berger et al.(2008)
Hoxb3_1720
0.660
0.561
HOXB3
M03126_2.00
Homo sapiens
NBTAATKRNN
NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXB3_1
0.660
0.561
lms
M03863_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
CG13424_1
0.657
0.526
lms
M03864_2.00
Drosophila melanogaster
HTWATTRDWTDATTRR
YYAATHAWHYAATWAD
SELEX
Nitta et al.(2015)
lms_1
0.657
0.526
lms
M06536_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Mathelier et al.(2014)
MA0175.1
0.657
0.526
lms
M06347_2.00
Drosophila melanogaster
NYTAATKR
YMATTARN
B1H
Zhu et al.(2011)
CG13424_Cell_FBgn0034520
0.657
0.526
lms
M06348_2.00
Drosophila melanogaster
NNHTAATDRN
NYHATTADNN
B1H
Zhu et al.(2011)
CG13424_SOLEXA_2_FBgn0034520
0.657
0.526
lms
M06349_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Zhu et al.(2011)
CG13424_SOLEXA_FBgn0034520
0.657
0.526
LBX1
M02090_2.00
Homo sapiens
NTAAYTRG
CYARTTAN
PBM
Weirauch et al.(2014)
pTH6404
0.656
0.561
lbl
M00561_2.00
Drosophila melanogaster
NTAAYDRGN
NCYHRTTAN
PBM
Busser et al.(2012a)
Lbl
0.656
0.561
lbe
M03822_2.00
Drosophila melanogaster
TAACRABV
BVTYGTTA
SELEX
Nitta et al.(2015)
lbe_1
0.656
0.561
lbe
M03823_2.00
Drosophila melanogaster
BTVAKBRV
BYVMTBAV
SELEX
Nitta et al.(2015)
lbe_2
0.656
0.561
lbe
M03824_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
lbe_3
0.656
0.561
lbe
M03825_2.00
Drosophila melanogaster
TAAYRAKN
NMTYRTTA
SELEX
Nitta et al.(2015)
lbe_4
0.656
0.561
lbl
M03815_2.00
Drosophila melanogaster
NTAAYKRG
CYMRTTAN
SELEX
Nitta et al.(2015)
lbl_1
0.656
0.561
lbl
M03816_2.00
Drosophila melanogaster
NTAAYRAGN
NCTYRTTAN
SELEX
Nitta et al.(2015)
lbl_2
0.656
0.561
lbl
M06508_2.00
Drosophila melanogaster
TAATKR
YMATTA
B1H
Mathelier et al.(2014)
MA0232.1
0.656
0.561
lbe
M06510_2.00
Drosophila melanogaster
TAAYNA
TNRTTA
B1H
Mathelier et al.(2014)
MA0231.1
0.656
0.561
lbe
M06299_2.00
Drosophila melanogaster
NHTAAYNA
TNRTTADN
B1H
Zhu et al.(2011)
Lbe_Cell_FBgn0011278
0.656
0.561
lbe
M06300_2.00
Drosophila melanogaster
YTAAYBA
TVRTTAR
B1H
Zhu et al.(2011)
Lbe_SOLEXA_FBgn0011278
0.656
0.561
lbl
M06295_2.00
Drosophila melanogaster
VHTAATKR
YMATTADB
B1H
Zhu et al.(2011)
Lbl_Cell_FBgn0008651
0.656
0.561
lbl
M06296_2.00
Drosophila melanogaster
NHTAAYBA
TVRTTADN
B1H
Zhu et al.(2011)
Lbl_SOLEXA_FBgn0008651
0.656
0.561
Hoxa1
M00450_2.00
Mus musculus
NHRATKRNN
NNYMATYDN
PBM
Berger et al.(2008)
Hoxa1_3425
0.651
0.596
O76842_CUPSA
M02199_2.00
Cupiennius salei
TTAATTAB
VTAATTAA
PBM
Weirauch et al.(2014)
pTH6251
0.651
0.596
HOXA1
M03096_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
HOXA1_1
0.651
0.596
lab
M03797_2.00
Drosophila melanogaster
NTAATTAS
STAATTAN
SELEX
Nitta et al.(2015)
lab_1
0.651
0.596
HOXA1
M04959_2.00
Homo sapiens
NTMATKAN
NTMATKAN
SELEX
Yin et al.(2017)
HOXA1_FL_HT-SELEX
0.651
0.596
lab
M06493_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Mathelier et al.(2014)
MA0230.1
0.651
0.596
lab
M06260_2.00
Drosophila melanogaster
TTAATKA
TMATTAA
B1H
Zhu et al.(2011)
Lab_Cell_FBgn0002522
0.651
0.596
lab
M06261_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Lab_SOLEXA_FBgn0002522
0.651
0.596
HOXA1
M09133_2.00
Homo sapiens
NKGATGGATG
CATCCATCMN
Misc
Kulakovskiy et al.(2013)
HXA1_HUMAN.H11MO.0.C
0.651
0.596
Hoxa1
M09196_2.00
Mus musculus
NKGATGGATG
CATCCATCMN
Misc
Kulakovskiy et al.(2013)
HXA1_MOUSE.H11MO.0.C
0.651
0.596
HOXA1
M04960_2.00
Homo sapiens
NTMATKAN
NTMATKAN
SELEX
Yin et al.(2017)
HOXA1_FL_Methyl-HT-SELEX_1
0.651
0.596
HOXA1
M04961_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
HOXA1_FL_Methyl-HT-SELEX_2
0.651
0.596
HOXB1
M05057_2.00
Homo sapiens
NTAATTAS
STAATTAN
SELEX
Yin et al.(2017)
HOXB1_eDBD_HT-SELEX
0.651
0.579
HOXB1
M05058_2.00
Homo sapiens
GTAATBAN
NTVATTAC
SELEX
Yin et al.(2017)
HOXB1_eDBD_Methyl-HT-SELEX_1
0.651
0.579
HOXB1
M05059_2.00
Homo sapiens
NTRAYGMB
VKCRTYAN
SELEX
Yin et al.(2017)
HOXB1_eDBD_Methyl-HT-SELEX_2
0.651
0.579
Nanog
M02098_2.00
Mus musculus
NHDAYNDNN
NNHNRTHDN
PBM
Weirauch et al.(2014)
pTH5685
0.651
0.421
NANOG
M05015_2.00
Homo sapiens
NYRABBVB
VBVVTYRN
SELEX
Yin et al.(2017)
NANOG_eDBD_HT-SELEX
0.651
0.421
NANOG
M09139_2.00
Homo sapiens
NTYWRCATNWSAAWRVN
NBYWTTSWNATGYWRAN
Misc
Kulakovskiy et al.(2013)
NANOG_HUMAN.H11MO.0.A
0.651
0.421
Nanog
M09176_2.00
Mus musculus
HTYWRMAWNWSAAWRVV
BBYWTTSWNWTKYWRAD
Misc
Kulakovskiy et al.(2013)
NANOG_MOUSE.H11MO.0.A
0.651
0.421
Nanog
M09565_2.00
Mus musculus
BYTRATKGSY
RSCMATYARV
Misc
Heinz et al.(2010)
mES-Nanog_GSE11724
0.651
0.421
NANOG
M10664_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_01
0.651
0.421
NANOG
M10665_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_02
0.651
0.421
NANOG
M10666_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_05
0.651
0.421
NANOG
M10667_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_07
0.651
0.421
NANOG
M10668_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_Q3
0.651
0.421
NANOG
M10669_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NANOG_Q6
0.651
0.421
NANOG
M05016_2.00
Homo sapiens
NHAAYGH
DCRTTDN
SELEX
Yin et al.(2017)
NANOG_eDBD_Methyl-HT-SELEX_1
0.651
0.421
NANOG
M05017_2.00
Homo sapiens
NYRABKRN
NYMVTYRN
SELEX
Yin et al.(2017)
NANOG_eDBD_Methyl-HT-SELEX_2
0.651
0.421
Barx2
M00457_2.00
Mus musculus
NTAABNDNN
NNHNVTTAN
PBM
Berger et al.(2008)
Barx2_3447
0.649
0.491
BARX2
M04915_2.00
Homo sapiens
NTAAYKRTTWWN
NWWAAYMRTTAN
SELEX
Yin et al.(2017)
BARX2_FL_HT-SELEX
0.649
0.491
BARX2
M04916_2.00
Homo sapiens
NTAAYKRTTWWN
NWWAAYMRTTAN
SELEX
Yin et al.(2017)
BARX2_FL_Methyl-HT-SELEX
0.649
0.491
Barx1
M00413_2.00
Mus musculus
NNTAAYBDNN
NNHVRTTANN
PBM
Berger et al.(2008)
Barx1_2877
0.649
0.474
barx1
M02107_2.00
Tetraodon nigroviridis
NTAAYNNNN
NNNNRTTAN
PBM
Weirauch et al.(2014)
pTH6449
0.649
0.474
BARX1
M03144_2.00
Homo sapiens
TAATBGNWWWTTAATBR
YVATTAAWWWNCVATTA
SELEX
Jolma et al.(2013)
BARX1_1
0.649
0.474
BARX1
M03145_2.00
Homo sapiens
NTAATBRN
NYVATTAN
SELEX
Jolma et al.(2013)
BARX1_2
0.649
0.474
Barx1
M09181_2.00
Mus musculus
NNWAAKKGYTWH
DWARCMMTTWNN
Misc
Kulakovskiy et al.(2013)
BARX1_MOUSE.H11MO.0.C
0.649
0.474
ventx3.2
M02232_2.00
Xenopus tropicalis
ATTAATTA
TAATTAAT
PBM
Weirauch et al.(2014)
pTH6291
0.649
0.456
Gbx2
M00462_2.00
Mus musculus
NNDAHNN
NNDTHNN
PBM
Berger et al.(2008)
Gbx2_3110
0.648
0.596
Gbx1
M00525_2.00
Mus musculus
NNTAATNR
YNATTANN
PBM
Berger et al.(2008)
Gbx1_2883
0.648
0.596
GBX1
M03193_2.00
Homo sapiens
NBTAATTRSB
VSYAATTAVN
SELEX
Jolma et al.(2013)
GBX1_1
0.648
0.596
GBX2
M03201_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
GBX2_1
0.648
0.596
GBX2
M03202_2.00
Homo sapiens
TAATTRVBCAATWA
TWATTGVBYAATTA
SELEX
Jolma et al.(2013)
GBX2_2
0.648
0.596
GBX2
M03203_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
GBX2_3
0.648
0.596
Gbx1
M03286_2.00
Mus musculus
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
Gbx1_1
0.648
0.596
Gbx2
M03268_2.00
Mus musculus
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
Gbx2_1
0.648
0.596
unpg
M03836_2.00
Drosophila melanogaster
SSTAATYRVN
NBYRATTASS
SELEX
Nitta et al.(2015)
unpg_1
0.648
0.596
GBX2
M05265_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_eDBD_HT-SELEX
0.648
0.596
GBX2
M05268_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
GBX2_FL_HT-SELEX
0.648
0.596
unpg
M06517_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0251.1
0.648
0.596
unpg
M06311_2.00
Drosophila melanogaster
NBTAATTR
YAATTAVN
B1H
Zhu et al.(2011)
Unpg_Cell_FBgn0015561
0.648
0.596
unpg
M06312_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Unpg_SOLEXA_FBgn0015561
0.648
0.596
GBX2
M05266_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_1
0.648
0.596
GBX2
M05267_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_eDBD_Methyl-HT-SELEX_2
0.648
0.596
GBX2
M05269_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_1
0.648
0.596
GBX2
M05270_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
GBX2_FL_Methyl-HT-SELEX_2
0.648
0.596
MSX2
M00290_2.00
Homo sapiens
WDATNDNN
NNHNATHW
PBM
Barrera et al.(2016)
MSX2_REF
0.645
0.526
Msx2
M00414_2.00
Mus musculus
HRATKRNN
NNYMATYD
PBM
Berger et al.(2008)
Msx2_3449
0.645
0.526
Msx3
M00429_2.00
Mus musculus
TAATKDNN
NNHMATTA
PBM
Berger et al.(2008)
Msx3_3206
0.645
0.526
Msx1
M00501_2.00
Mus musculus
NHDATND
HNATHDN
PBM
Berger et al.(2008)
Msx1_3031
0.645
0.526
Dr
M00555_2.00
Drosophila melanogaster
TAATTRNN
NNYAATTA
PBM
Busser et al.(2012a)
Msh
0.645
0.526
MSX1
M03184_2.00
Homo sapiens
TAATTRBHHNHTAATTRN
NYAATTADNDDVYAATTA
SELEX
Jolma et al.(2013)
MSX1_1
0.645
0.526
MSX1
M03185_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_2
0.645
0.526
MSX1
M03186_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_3
0.645
0.526
MSX2
M03127_2.00
Homo sapiens
TAATTRBHWKWTAATTGV
BCAATTAWMWDVYAATTA
SELEX
Jolma et al.(2013)
MSX2_1
0.645
0.526
MSX2
M03128_2.00
Homo sapiens
NTAATTGB
VCAATTAN
SELEX
Jolma et al.(2013)
MSX2_2
0.645
0.526
Msx3
M03255_2.00
Mus musculus
TAATTGSHHNNTAATTRN
NYAATTANNDDSCAATTA
SELEX
Jolma et al.(2013)
Msx3_1
0.645
0.526
Msx3
M03256_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Msx3_2
0.645
0.526
MSX1
M05221_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX
0.645
0.526
MSX1
M05224_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX
0.645
0.526
MSX2
M05060_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX
0.645
0.526
Dr
M06482_2.00
Drosophila melanogaster
TAATTGS
SCAATTA
B1H
Mathelier et al.(2014)
MA0188.1
0.645
0.526
Dr
M06229_2.00
Drosophila melanogaster
TAATTGSHB
VDSCAATTA
B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492
0.645
0.526
Dr
M06230_2.00
Drosophila melanogaster
TAATTR
YAATTA
B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492
0.645
0.526
MSX1
M10715_2.00
Homo sapiens
HNBTWWNTG
CANWWAVND
Transfac
Matys et al.(2006)
V$MSX1_01
0.645
0.526
MSX1
M10716_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5_01
0.645
0.526
MSX1
M10717_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5
0.645
0.526
MSX2
M10677_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q3
0.645
0.526
MSX2
M10678_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q6
0.645
0.526
MSX2
M00288_2.00
Homo sapiens
NTAATNDN
NHNATTAN
PBM
Barrera et al.(2016)
MSX2_P148H
0.645
0.526
MSX1
M05222_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1
0.645
0.526
MSX1
M05223_2.00
Homo sapiens
NTWAYGMB
VKCRTWAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2
0.645
0.526
MSX1
M05225_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1
0.645
0.526
MSX1
M05226_2.00
Homo sapiens
NTWAYGWB
VWCRTWAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2
0.645
0.526
MSX2
M05061_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1
0.645
0.526
MSX2
M05062_2.00
Homo sapiens
NTAAYGAB
VTCRTTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2
0.645
0.526
NEMVEDRAFT_v1g164989
M02148_2.00
Nematostella vectensis
YTAATTAG
CTAATTAR
PBM
Weirauch et al.(2014)
pTH5994
0.643
0.491
B-H1
M03829_2.00
Drosophila melanogaster
VNTAAWYGNN
NNCRWTTANB
SELEX
Nitta et al.(2015)
B-H1_1
0.643
0.544
B-H1
M03830_2.00
Drosophila melanogaster
SNTAADBGN
NCVHTTANS
SELEX
Nitta et al.(2015)
B-H1_2
0.643
0.544
B-H1
M06512_2.00
Drosophila melanogaster
HTAAWYG
CRWTTAD
B1H
Mathelier et al.(2014)
MA0168.1
0.643
0.544
Barhl1
M00433_2.00
Mus musculus
NTAAWNRNN
NNYNWTTAN
PBM
Berger et al.(2008)
Barhl1_2590
0.641
0.544
Barhl1
M03258_2.00
Mus musculus
NNTAAWYGNH
DNCRWTTANN
SELEX
Jolma et al.(2013)
Barhl1_1
0.641
0.544
Barhl1
M03259_2.00
Mus musculus
NNTAADNRNN
NNYNHTTANN
SELEX
Jolma et al.(2013)
Barhl1_2
0.641
0.544
Barhl1
M03260_2.00
Mus musculus
TAAWYGNYNNTAAWYG
CRWTTANNRNCRWTTA
SELEX
Jolma et al.(2013)
Barhl1_3
0.641
0.544
BARHL1
M05091_2.00
Homo sapiens
NTAAWYGN
NCRWTTAN
SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_1
0.641
0.544
BARHL1
M05092_2.00
Homo sapiens
NTAADBGN
NCVHTTAN
SELEX
Yin et al.(2017)
BARHL1_eDBD_HT-SELEX_2
0.641
0.544
BARHL1
M05093_2.00
Homo sapiens
NTAADKGN
NCMHTTAN
SELEX
Yin et al.(2017)
BARHL1_eDBD_Methyl-HT-SELEX
0.641
0.544
B-H2
M03810_2.00
Drosophila melanogaster
VNTAAAYGNH
DNCRTTTANB
SELEX
Nitta et al.(2015)
B-H2_1
0.641
0.526
B-H2
M03811_2.00
Drosophila melanogaster
SNTAADBGN
NCVHTTANS
SELEX
Nitta et al.(2015)
B-H2_2
0.641
0.526
B-H2
M06503_2.00
Drosophila melanogaster
WTAATTG
CAATTAW
B1H
Mathelier et al.(2014)
MA0169.1
0.641
0.526
Barhl2
M00460_2.00
Mus musculus
NTAAWNRNN
NNYNWTTAN
PBM
Berger et al.(2008)
Barhl2_3868
0.641
0.509
BARHL2
M03157_2.00
Homo sapiens
NNTAAWYGNN
NNCRWTTANN
SELEX
Jolma et al.(2013)
BARHL2_1
0.641
0.509
BARHL2
M03158_2.00
Homo sapiens
NNTAAWBGNN
NNCVWTTANN
SELEX
Jolma et al.(2013)
BARHL2_2
0.641
0.509
BARHL2
M03159_2.00
Homo sapiens
TAAWYGNNNNTAAWYR
YRWTTANNNNCRWTTA
SELEX
Jolma et al.(2013)
BARHL2_3
0.641
0.509
BARHL2
M03160_2.00
Homo sapiens
NNTAAWYGNH
DNCRWTTANN
SELEX
Jolma et al.(2013)
BARHL2_4
0.641
0.509
BARHL2
M03161_2.00
Homo sapiens
NNTAAWYGNN
NNCRWTTANN
SELEX
Jolma et al.(2013)
BARHL2_5
0.641
0.509
BARHL2
M03162_2.00
Homo sapiens
TAAWYGNYNHTAAWYG
CRWTTADNRNCRWTTA
SELEX
Jolma et al.(2013)
BARHL2_6
0.641
0.509
BARHL2
M05164_2.00
Homo sapiens
HTAAAYGNY
RNCRTTTAD
SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_1
0.641
0.509
BARHL2
M05165_2.00
Homo sapiens
NTAAWTGNB
VNCAWTTAN
SELEX
Yin et al.(2017)
BARHL2_eDBD_HT-SELEX_2
0.641
0.509
BARHL2
M05167_2.00
Homo sapiens
NTAAWYGN
NCRWTTAN
SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_1
0.641
0.509
BARHL2
M05168_2.00
Homo sapiens
NTAAWYGN
NCRWTTAN
SELEX
Yin et al.(2017)
BARHL2_FL_HT-SELEX_2
0.641
0.509
BARHL2
M05166_2.00
Homo sapiens
NTAAWTGNB
VNCAWTTAN
SELEX
Yin et al.(2017)
BARHL2_eDBD_Methyl-HT-SELEX
0.641
0.509
BARHL2
M05169_2.00
Homo sapiens
NTAAWTGN
NCAWTTAN
SELEX
Yin et al.(2017)
BARHL2_FL_Methyl-HT-SELEX
0.641
0.509
ENSTNIG00000006040
M02106_2.00
Tetraodon nigroviridis
NNNBTAAWHRBNN
NNVYDWTTAVNNN
PBM
Weirauch et al.(2014)
pTH6503
0.641
0.491
HESX1
M00309_2.00
Homo sapiens
HTAATTRGN
NCYAATTAD
PBM
Barrera et al.(2016)
HESX1_REF
0.639
0.456
P79681_ACIBE
M02200_2.00
Acipenser baerii
DTAATTRB
VYAATTAH
PBM
Weirauch et al.(2014)
pTH6156
0.639
0.456
HESX1
M00307_2.00
Homo sapiens
TAATTRNN
NNYAATTA
PBM
Barrera et al.(2016)
HESX1_N125S
0.639
0.456
HESX1
M00308_2.00
Homo sapiens
NATAHATRN
NYATDTATN
PBM
Barrera et al.(2016)
HESX1_R160C
0.639
0.439
MSX2
M00289_2.00
Homo sapiens
WDATWDNN
NNHWATHW
PBM
Barrera et al.(2016)
MSX2_R172H
0.638
0.509
TLX3
M05233_2.00
Homo sapiens
NAATKGNNNNNNNNNNNNNCAATTN
NAATTGNNNNNNNNNNNNNCMATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_HT-SELEX
0.636
0.491
TLX3
M05235_2.00
Homo sapiens
NAATTGNNNNNHNNNNCAATTN
NAATTGNNNNDNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_FL_HT-SELEX
0.636
0.491
TLX3
M05234_2.00
Homo sapiens
NAATTGNNNNNNNNNNDCAATTD
HAATTGHNNNNNNNNNNCAATTN
SELEX
Yin et al.(2017)
TLX3_eDBD_Methyl-HT-SELEX
0.636
0.491
TLX3
M05236_2.00
Homo sapiens
HAATTRNNNNNNNNNYHATTV
BAATDRNNNNNNNNNYAATTD
SELEX
Yin et al.(2017)
TLX3_FL_Methyl-HT-SELEX
0.636
0.491
NK7.1
M03847_2.00
Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB
SELEX
Nitta et al.(2015)
NK7.1_1
0.634
0.544
NK7.1
M03848_2.00
Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN
SELEX
Nitta et al.(2015)
NK7.1_2
0.634
0.544
NK7.1
M06524_2.00
Drosophila melanogaster
TTAATDR
YHATTAA
B1H
Mathelier et al.(2014)
MA0196.1
0.634
0.544
NK7.1
M06323_2.00
Drosophila melanogaster
NTTAATDR
YHATTAAN
B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321
0.634
0.544
NK7.1
M06324_2.00
Drosophila melanogaster
YTAATDR
YHATTAR
B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321
0.634
0.544
SNAPOd2T00006620001
M02231_2.00
Oikopleura dioica
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5666
0.632
0.474
Hmx2
M00507_2.00
Mus musculus
NHRANYGNNN
NNNCRNTYDN
PBM
Berger et al.(2008)
Hmx2_3424
0.632
0.509
Hmx1
M00524_2.00
Mus musculus
NHDAKYRNNN
NNNYRMTHDN
PBM
Berger et al.(2008)
Hmx1_3423
0.632
0.509
HMX1
M03243_2.00
Homo sapiens
NNTTAAKTGNY
RNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX1_1
0.632
0.509
HMX2
M03234_2.00
Homo sapiens
NNTTAAKTGNN
NNCAMTTAANN
SELEX
Jolma et al.(2013)
HMX2_1
0.632
0.509
HMX3
M03233_2.00
Homo sapiens
NNNTAAKTGNN
NNCAMTTANNN
SELEX
Jolma et al.(2013)
HMX3_1
0.632
0.509
Hmx
M03882_2.00
Drosophila melanogaster
NYRAKYGN
NCRMTYRN
SELEX
Nitta et al.(2015)
Hmx_1
0.632
0.509
HMX1
M05392_2.00
Homo sapiens
BNYAAKTGN
NCAMTTRNV
SELEX
Yin et al.(2017)
HMX1_eDBD_HT-SELEX
0.632
0.509
HMX2
M05373_2.00
Homo sapiens
GNHRAKYGS
SCRMTYDNC
SELEX
Yin et al.(2017)
HMX2_eDBD_HT-SELEX
0.632
0.509
HMX2
M05375_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_HT-SELEX
0.632
0.509
Hmx
M06554_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Mathelier et al.(2014)
MA0192.1
0.632
0.509
Hmx
M06386_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Zhu et al.(2011)
Hmx_Cell_FBgn0085448
0.632
0.509
Hmx
M06387_2.00
Drosophila melanogaster
TTAATTG
CAATTAA
B1H
Zhu et al.(2011)
Hmx_SOLEXA_FBgn0085448
0.632
0.509
HMX3
M10754_2.00
Homo sapiens
CAAGTGCGTG
CACGCACTTG
Transfac
Matys et al.(2006)
V$HMX1_01
0.632
0.509
HMX1
M05393_2.00
Homo sapiens
VNYAAKTGB
VCAMTTRNB
SELEX
Yin et al.(2017)
HMX1_eDBD_Methyl-HT-SELEX
0.632
0.509
HMX2
M05374_2.00
Homo sapiens
NNTAAKTGN
NCAMTTANN
SELEX
Yin et al.(2017)
HMX2_eDBD_Methyl-HT-SELEX
0.632
0.509
HMX2
M05376_2.00
Homo sapiens
NTTAAKTGNN
NNCAMTTAAN
SELEX
Yin et al.(2017)
HMX2_FL_Methyl-HT-SELEX
0.632
0.509
Hoxd1
M00492_2.00
Mus musculus
NRATNDNN
NNHNATYN
PBM
Berger et al.(2008)
Hoxd1_3448
0.631
0.561
HOXD1
M05098_2.00
Homo sapiens
BTAATTAV
BTAATTAV
SELEX
Yin et al.(2017)
HOXD1_eDBD_HT-SELEX
0.631
0.561
Hoxd1
M10768_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD1_03
0.631
0.561
HOXD1
M05099_2.00
Homo sapiens
BTAATKAV
BTMATTAV
SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_1
0.631
0.561
HOXD1
M05100_2.00
Homo sapiens
NTWAYGAB
VTCRTWAN
SELEX
Yin et al.(2017)
HOXD1_eDBD_Methyl-HT-SELEX_2
0.631
0.561
CG11085
M03857_2.00
Drosophila melanogaster
BTAAWYGN
NCRWTTAV
SELEX
Nitta et al.(2015)
CG11085_1
0.629
0.509
CG11085
M03858_2.00
Drosophila melanogaster
NTAAWCGN
NCGWTTAN
SELEX
Nitta et al.(2015)
CG11085_2
0.629
0.509
CG11085
M06532_2.00
Drosophila melanogaster
TTAATDG
CHATTAA
B1H
Mathelier et al.(2014)
MA0171.1
0.629
0.509
CG11085
M06339_2.00
Drosophila melanogaster
NTTAATDGV
BCHATTAAN
B1H
Zhu et al.(2011)
CG11085_Cell_FBgn0030408
0.629
0.509
CG11085
M06340_2.00
Drosophila melanogaster
NHTAAWBRNN
NNYVWTTADN
B1H
Zhu et al.(2011)
CG11085_SOLEXA_FBgn0030408
0.629
0.509
ESX1
M00292_2.00
Homo sapiens
NNTAATNDN
NHNATTANN
PBM
Barrera et al.(2016)
ESX1_REF
0.628
0.526
ESX1
M03137_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_1
0.628
0.526
ESX1
M03138_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_2
0.628
0.526
ESX1
M05087_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_HT-SELEX
0.628
0.526
ESX1
M05089_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_HT-SELEX
0.628
0.526
ESX1
M05088_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_Methyl-HT-SELEX
0.628
0.526
ESX1
M05090_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_Methyl-HT-SELEX
0.628
0.526
ems
M02114_2.00
Drosophila melanogaster
NTAATKRNB
VNYMATTAN
PBM
Weirauch et al.(2014)
pTH5673
0.625
0.491
ems
M03789_2.00
Drosophila melanogaster
BTAATTAN
NTAATTAV
SELEX
Nitta et al.(2015)
ems_1
0.625
0.491
ems
M03790_2.00
Drosophila melanogaster
BTAATTAVBVBTAATKRN
NYMATTAVBVBTAATTAV
SELEX
Nitta et al.(2015)
ems_2
0.625
0.491
ems
M03791_2.00
Drosophila melanogaster
BTAATKRN
NYMATTAV
SELEX
Nitta et al.(2015)
ems_3
0.625
0.491
ems
M03792_2.00
Drosophila melanogaster
STAATKRSSSSTAATKRV
BYMATTASSSSYMATTAS
SELEX
Nitta et al.(2015)
ems_4
0.625
0.491
ems
M06484_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Mathelier et al.(2014)
MA0219.1
0.625
0.491
ems
M06233_2.00
Drosophila melanogaster
WHTAATKR
YMATTADW
B1H
Zhu et al.(2011)
Ems_Cell_FBgn0000576
0.625
0.491
ems
M06234_2.00
Drosophila melanogaster
TSTMATHM
KDATKASA
B1H
Zhu et al.(2011)
ems_FlyReg_FBgn0000576
0.625
0.491
ems
M06235_2.00
Drosophila melanogaster
YTAATKA
TMATTAR
B1H
Zhu et al.(2011)
Ems_SOLEXA_FBgn0000576
0.625
0.491
ems
M09676_2.00
Drosophila melanogaster
WTWATGA
TCATWAW
Misc
Kulakovskiy et al.(2009)
ems
0.625
0.491
ro
M06495_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0241.1
0.624
0.544
ro
M06264_2.00
Drosophila melanogaster
NYTAATTA
TAATTARN
B1H
Zhu et al.(2011)
Ro_Cell_FBgn0003267
0.624
0.544
ro
M06265_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Ro_SOLEXA_FBgn0003267
0.624
0.544
Nkx1-1
M00442_2.00
Mus musculus
NNTAATNDNN
NNHNATTANN
PBM
Berger et al.(2008)
Nkx1-1_3856
0.621
0.544
Nkx1-2
M00503_2.00
Mus musculus
NNTAAWNDN
NHNWTTANN
PBM
Berger et al.(2008)
Nkx1-2_3214
0.621
0.544
slou
M00557_2.00
Drosophila melanogaster
NNTAATDRN
NYHATTANN
PBM
Busser et al.(2012a)
Slou
0.621
0.544
slou
M03798_2.00
Drosophila melanogaster
VBTAATTRSB
VSYAATTAVB
SELEX
Nitta et al.(2015)
slou_1
0.621
0.544
slou
M06494_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Mathelier et al.(2014)
MA0245.1
0.621
0.544
slou
M06262_2.00
Drosophila melanogaster
BYTAATKR
YMATTARV
B1H
Zhu et al.(2011)
Slou_Cell_FBgn0002941
0.621
0.544
slou
M06263_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Zhu et al.(2011)
Slou_SOLEXA_FBgn0002941
0.621
0.544
HESX1
M00306_2.00
Homo sapiens
WRATDRNN
NNYHATYW
PBM
Barrera et al.(2016)
HESX1_E149K
0.618
0.439
Hmx3_CONSTRUCT
M00537_2.00
PBM CONSTRUCTS
NHDADYRNN
NNYRHTHDN
PBM
Berger et al.(2008)
Hmx3_3490
0.618
0.491
ceh-62
M02187_2.00
Caenorhabditis elegans
NNYAATTRNN
NNYAATTRNN
PBM
Weirauch et al.(2014)
pTH5492
0.616
0.509
Hoxd12_CONSTRUCT
M00538_2.00
PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN
PBM
Berger et al.(2008)
Hoxd12_3481
0.615
0.526
HOXD12
M03206_2.00
Homo sapiens
SYAATAAAA
TTTTATTRS
SELEX
Jolma et al.(2013)
HOXD12_1
0.615
0.526
HOXD12
M03207_2.00
Homo sapiens
RVTCGTAAAAH
DTTTTACGABY
SELEX
Jolma et al.(2013)
HOXD12_2
0.615
0.526
HOXD12
M03208_2.00
Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN
SELEX
Jolma et al.(2013)
HOXD12_3
0.615
0.526
HOXD12
M03209_2.00
Homo sapiens
DTTWATYRC
GYRATWAAH
SELEX
Jolma et al.(2013)
HOXD12_4
0.615
0.526
HOXD12
M05279_2.00
Homo sapiens
NKTWACGAYN
NRTCGTWAMN
SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX
0.615
0.526
HOXD12
M05280_2.00
Homo sapiens
NRTCGTAAAH
DTTTACGAYN
SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX
0.615
0.526
ENSCING00000016045
M02078_2.00
Ciona intestinalis
NNYTAATTRGN
NCYAATTARNN
PBM
Weirauch et al.(2014)
pTH6551
0.614
0.404
Emx2
M00495_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Emx2_3420
0.614
0.491
EMX2
M03210_2.00
Homo sapiens
NBTAATTANN
NNTAATTAVN
SELEX
Jolma et al.(2013)
EMX2_1
0.614
0.491
EMX2
M03211_2.00
Homo sapiens
YMATTARBTAATKR
YMATTAVYTAATKR
SELEX
Jolma et al.(2013)
EMX2_2
0.614
0.491
E5
M03814_2.00
Drosophila melanogaster
STAATKNN
NNMATTAS
SELEX
Nitta et al.(2015)
E5_1
0.614
0.491
EMX2
M05281_2.00
Homo sapiens
YTAATKAB
VTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_HT-SELEX
0.614
0.491
E5
M06507_2.00
Drosophila melanogaster
BTAATKA
TMATTAV
B1H
Mathelier et al.(2014)
MA0189.1
0.614
0.491
E5
M06293_2.00
Drosophila melanogaster
NBTAATKA
TMATTAVN
B1H
Zhu et al.(2011)
E5_Cell_FBgn0008646
0.614
0.491
E5
M06294_2.00
Drosophila melanogaster
NTAATDR
YHATTAN
B1H
Zhu et al.(2011)
E5_SOLEXA_FBgn0008646
0.614
0.491
EMX2
M05282_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Yin et al.(2017)
EMX2_eDBD_Methyl-HT-SELEX
0.614
0.491
EMX1
M02088_2.00
Homo sapiens
NNTAATKANN
NNTMATTANN
PBM
Weirauch et al.(2014)
pTH5677
0.614
0.474
EMX1
M03151_2.00
Homo sapiens
NBTAATTRNN
NNYAATTAVN
SELEX
Jolma et al.(2013)
EMX1_1
0.614
0.474
EMX1
M03152_2.00
Homo sapiens
YMATTARYTAATKR
YMATTARYTAATKR
SELEX
Jolma et al.(2013)
EMX1_2
0.614
0.474
EMX1
M05145_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_HT-SELEX
0.614
0.474
EMX1
M05147_2.00
Homo sapiens
BTAATTAV
BTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_HT-SELEX
0.614
0.474
EMX1
M05146_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
EMX1_eDBD_Methyl-HT-SELEX
0.614
0.474
EMX1
M05148_2.00
Homo sapiens
BTAATTAN
NTAATTAV
SELEX
Yin et al.(2017)
EMX1_FL_Methyl-HT-SELEX
0.614
0.474
Q24782_9CNID
M02206_2.00
Eleutheria dichotoma
TTAATTAA
TTAATTAA
PBM
Weirauch et al.(2014)
pTH5486
0.612
0.632
NEMVEDRAFT_v1g8907
M02154_2.00
Nematostella vectensis
NTAATDRNNN
NNNYHATTAN
PBM
Weirauch et al.(2014)
pTH6483
0.610
0.544
Rax
M00426_2.00
Mus musculus
NNTAATTRN
NYAATTANN
PBM
Berger et al.(2008)
Rax_3443
0.609
0.474
RAX
M03149_2.00
Homo sapiens
NHTAATTRNN
NNYAATTADN
SELEX
Jolma et al.(2013)
RAX_1
0.609
0.474
Rx
M03840_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Rx_1
0.609
0.474
Rx
M03841_2.00
Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN
SELEX
Nitta et al.(2015)
Rx_2
0.609
0.474
RAX
M05142_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX
0.609
0.474
Rx
M06520_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0202.1
0.609
0.474
Rx
M06317_2.00
Drosophila melanogaster
VYTAATTR
YAATTARB
B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617
0.609
0.474
Rx
M06318_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617
0.609
0.474
Rax
M10773_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RAX_04
0.609
0.474
RAX
M05143_2.00
Homo sapiens
NTAAYRNN
NNYRTTAN
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1
0.609
0.474
RAX
M05144_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2
0.609
0.474
RAX2
M03214_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
RAXL1_1
0.609
0.456
Lbx2
M00465_2.00
Mus musculus
NHAABNRN
NYNVTTDN
PBM
Berger et al.(2008)
Lbx2_3869
0.606
0.509
LBX2
M03224_2.00
Homo sapiens
TAAYYRSNTYNAB
VTNRANSYRRTTA
SELEX
Jolma et al.(2013)
LBX2_1
0.606
0.509
LBX2
M03225_2.00
Homo sapiens
NNTAATTRVN
NBYAATTANN
SELEX
Jolma et al.(2013)
LBX2_2
0.606
0.509
LBX2
M05321_2.00
Homo sapiens
HTAAYRAG
CTYRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_1
0.606
0.509
LBX2
M05322_2.00
Homo sapiens
NTAATTAAYKRG
CYMRTTAATTAN
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_2
0.606
0.509
LBX2
M05323_2.00
Homo sapiens
VYTAATTRGB
VCYAATTARB
SELEX
Yin et al.(2017)
LBX2_eDBD_HT-SELEX_3
0.606
0.509
LBX2
M05324_2.00
Homo sapiens
HTAAYGAG
CTCRTTAD
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_1
0.606
0.509
LBX2
M05325_2.00
Homo sapiens
ATAATTAATKAG
CTMATTAATTAT
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_2
0.606
0.509
LBX2
M05326_2.00
Homo sapiens
NNTAATKRDN
NHYMATTANN
SELEX
Yin et al.(2017)
LBX2_eDBD_Methyl-HT-SELEX_3
0.606
0.509
Dlx3
M00387_2.00
Mus musculus
NTAATDRNN
NNYHATTAN
PBM
Berger et al.(2008)
Dlx3_1030
0.604
0.456
Dlx2
M00423_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Dlx2_2273
0.604
0.456
Dll
M02112_2.00
Drosophila melanogaster
NVTAATTANN
NNTAATTABN
PBM
Weirauch et al.(2014)
pTH5506
0.604
0.456
DLX2
M03118_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX2_1
0.604
0.456
DLX3
M03081_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
DLX3_1
0.604
0.456
Dlx2
M03254_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Dlx2_1
0.604
0.456
Dll
M03777_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Dll_1
0.604
0.456
Dll
M03778_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Dll_2
0.604
0.456
DLX2
M05026_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX
0.604
0.456
DLX2
M05028_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX
0.604
0.456
DLX3
M04922_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX
0.604
0.456
DLX3
M04925_2.00
Homo sapiens
NTAATTRB
VYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX
0.604
0.456
Dll
M06479_2.00
Drosophila melanogaster
TAATTDB
VHAATTA
B1H
Mathelier et al.(2014)
MA0187.1
0.604
0.456
Dll
M06217_2.00
Drosophila melanogaster
TAATTDB
VHAATTA
B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157
0.604
0.456
Dll
M06218_2.00
Drosophila melanogaster
TAATKR
YMATTA
B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157
0.604
0.456
DLX3
M09129_2.00
Homo sapiens
RVTAATTRVH
DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C
0.604
0.456
Dlx3
M09172_2.00
Mus musculus
RVTAATTRVH
DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C
0.604
0.456
DLX2
M10674_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX2_Q6
0.604
0.456
dlx3.L
M10803_2.00
Xenopus laevis
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_02
0.604
0.456
DLX3
M10638_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q3
0.604
0.456
DLX3
M10639_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q6
0.604
0.456
dlx3.L
M10804_2.00
Xenopus laevis
YAWRTAAAYAWWRY
RYWWTRTTTAYWWR
Transfac
Matys et al.(2006)
V$XFD1_01
0.604
0.456
DLX2
M05027_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX
0.604
0.456
DLX2
M05029_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX
0.604
0.456
DLX3
M04923_2.00
Homo sapiens
NTWAYKHB
VDMRTWAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1
0.604
0.456
DLX3
M04924_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2
0.604
0.456
DLX3
M04926_2.00
Homo sapiens
NTWAYGHB
VDCRTWAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1
0.604
0.456
DLX3
M04927_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2
0.604
0.456
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000059953
Homeodomain
188
244
RKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKR
Links
Other
Homeodomain
family TFs
Other
Danio rerio
TFs
5466 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy