PBX1 (Equus caballus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSECAG00000013058 T209130_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.867 1.000
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867 1.000
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867 1.000
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867 1.000
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867 1.000
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867 1.000
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867 1.000
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867 1.000
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867 1.000
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867 1.000
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867 1.000
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867 1.000
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867 1.000
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867 1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867 0.982
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867 0.965
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867 0.965
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867 0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865 0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822 0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822 0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822 0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822 0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815 0.877
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815 0.877
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000011026 Homeodomain 147 206

Links

Other Homeodomain family TFs
Other Equus caballus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARF2 Arabidopsis thaliana AT5G62000 D 0.000
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.000
Bostr.13158s0186 Boechera stricta Bostr.13158s0186 I 0.000
mgf020855m Mimulus guttatus mgf020855m I 0.000
mgf015308m Mimulus guttatus mgf015308m I 0.000
mgf006511m Mimulus guttatus mgf006511m I 0.000
mgf005549m Mimulus guttatus mgf005549m I 0.000
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.000
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.000
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.000
Bostr.7867s0204 Boechera stricta Bostr.7867s0204 I 0.000
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.000
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.000
Eucgr.E00888 Eucalyptus grandis Eucgr.E00888 I 0.000
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.000
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.000
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.000
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.000
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.000
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.000
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.000
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.000
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.000
30068.m002516 Ricinus communis 30068.m002516 I 0.000
Pm024588 Prunus mume Pm024588 I 0.000
Pm024149 Prunus mume Pm024149 I 0.000
Pm018352 Prunus mume Pm018352 I 0.000
Ca_05681 Cicer arietinum Ca_05681 I 0.000
Cla019614 Citrullus lanatus Cla019614 I 0.000
Cla013021 Citrullus lanatus Cla013021 I 0.000
Ca_23296 Cicer arietinum Ca_23296 I 0.000
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.000
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.000
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.000
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.000
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.000
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.000
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.000
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.000
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.000
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.000
Ca_21948 Cicer arietinum Ca_21948 I 0.000
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.000
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.000
Thhalv10001365m.g Eutrema salsugineum Thhalv10001365m.g I 0.000
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.000
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.000
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.000
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.000
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.000
SapurV1A.0013s0230 Salix purpurea SapurV1A.0013s0230 I 0.000
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.000
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.000
Thhalv10024554m.g Eutrema salsugineum Thhalv10024554m.g I 0.000
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.000
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.000
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.000
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.000
PK16974.1 Cannabis sativa PK16974.1 I 0.000
PK07332.1 Cannabis sativa PK07332.1 I 0.000
PK02218.1 Cannabis sativa PK02218.1 I 0.000
Thhalv10029379m.g Eutrema salsugineum Thhalv10029379m.g I 0.000
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.000
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.000
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.000
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.000
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.000
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.000
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.000
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.000
Gorai.001G153900 Gossypium raimondii Gorai.001G153900 I 0.000
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.000
gene25123-v1.0-hybrid Fragaria vesca gene25123-v1.0-hybrid I 0.000
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.000
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.000
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.000
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.000
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.000
MDP0000310875 Malus domestica MDP0000310875 I 0.000
MDP0000258032 Malus domestica MDP0000258032 I 0.000
MDP0000194603 Malus domestica MDP0000194603 I 0.000
MDP0000139073 Malus domestica MDP0000139073 I 0.000
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.000
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.000
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.000
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.000
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.000
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.000
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.000
GLYMA18G40180 Glycine max GLYMA18G40180 I 0.000
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.000
GLYMA07G16170 Glycine max GLYMA07G16170 I 0.000
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.000
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.000
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.000
MTR_7g062540 Medicago truncatula MTR_7g062540 I 0.000
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.000
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.000
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.000
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.000
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.000
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.000
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.000
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.000
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.000
GLYMA03G41920 Glycine max GLYMA03G41920 I 0.000
Bo3g039330 Brassica oleracea Bo3g039330 I 0.000
Bo2g161810 Brassica oleracea Bo2g161810 I 0.000
Bo1g037360 Brassica oleracea Bo1g037360 I 0.000
ARF23 Oryza indica BGIOSGA033901 I 0.000
ARF9 Arabidopsis thaliana AT4G23980 I 0.000
ARF11 Arabidopsis thaliana AT2G46530 I 0.000
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.000
ARF9 Arabidopsis lyrata Al_scaffold_0007_1752 I 0.000
Bo3g108130 Brassica oleracea Bo3g108130 I 0.000
Bo7g109250 Brassica oleracea Bo7g109250 I 0.000
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.000
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.000
F775_31280 Aegilops tauschii F775_31280 I 0.000
Bra035910 Brassica rapa Bra035910 I 0.000
Bra019255 Brassica rapa Bra019255 I 0.000
Bra013748 Brassica rapa Bra013748 I 0.000
Bra010048 Brassica rapa Bra010048 I 0.000
Bo9g014770 Brassica oleracea Bo9g014770 I 0.000
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.000
OB11G21910 Oryza brachyantha OB11G21910 I 0.000
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.000
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.000
ARF11 Arabidopsis lyrata scaffold_403621.1 I 0.000
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.000
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.000
PRUPE_ppa002617mg Prunus persica PRUPE_ppa002617mg I 0.000
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.000
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.000
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.000
Si000340m.g Setaria italica Si000340m.g I 0.000
Si021216m.g Setaria italica Si021216m.g I 0.000
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.000
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.000
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.000
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.000
TCM_016500 Theobroma cacao TCM_016500 I 0.000
TCM_014743 Theobroma cacao TCM_014743 I 0.000
TCM_005126 Theobroma cacao TCM_005126 I 0.000
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.000
Solyc08g008380.2 Solanum lycopersicum Solyc08g008380.2 I 0.000
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.000
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.000
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.000
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.000
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.000
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.000
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.000
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.000
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.000
OBART11G15270 Oryza barthii OBART11G15270 I 0.000
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.000
OB12G20020 Oryza brachyantha OB12G20020 I 0.000
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.000
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.000
POPTR_0002s17350 Populus trichocarpa POPTR_0002s17350 I 0.000
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.000
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.000
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.000
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.000
OS11G0523800 Oryza sativa OS11G0523800 I 0.000
Bostr.15774s0314 Boechera stricta Bostr.15774s0314 N 0.000
ARF13 Arabidopsis lyrata Al_scaffold_0001_3500 N 0.000