HMBOX1 (Otolemur garnettii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOGAG00000001381 T213255_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.867 1.000
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.867 1.000
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.867 1.000
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.867 1.000
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.638 0.368
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.638 0.368
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.638 0.368
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.638 0.368
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.638 0.368
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.638 0.368
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.638 0.368
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.638 0.368
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.638 0.368
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.638 0.368
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.638 0.368
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.638 0.368
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.638 0.368
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.638 0.368
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.638 0.368
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.638 0.368
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.638 0.368
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000001227 Homeodomain 268 339

Links

Other Homeodomain family TFs
Other Otolemur garnettii TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0000832201 Angiostrongylus cantonensis ACAC_0000832201 N 0.000
ACOC_0000241101 Angiostrongylus costaricensis ACOC_0000241101 N 0.000
ANCCAN_04748 Ancylostoma caninum ANCCAN_04748 I 0.000
ANCCEY_09710 Ancylostoma ceylanicum ANCCEY_09710 I 0.000
Bm5937 Brugia malayi Bm5937 I 0.000
BTMF_0000940801 Brugia timori BTMF_0000940801 I 0.000
BXY_0544800 Bursaphelenchus xylophilus BXY_0544800 I 0.000
CBG01382 Caenorhabditis briggsae CBG01382 I 0.000
CBN09492 Caenorhabditis brenneri CBN09492 I 0.000
CBN29810 Caenorhabditis brenneri CBN29810 I 0.000
CJA09451 Caenorhabditis japonica CJA09451 I 0.000
CRE08815 Caenorhabditis remanei CRE08815 I 0.000
DICVIV_01396 Dictyocaulus viviparus DICVIV_01396 I 0.000
EVEC_0001219101 Enterobius vermicularis EVEC_0001219101 I 0.000
GPLIN_001033000 Globodera pallida GPLIN_001033000 N 0.000
Hba_11006 Heterorhabditis bacteriophora Hba_11006 I 0.000
HPBE_0001572101 Heligmosomoides bakeri HPBE_0001572101 I 0.000
HPLM_0000403401 Haemonchus placei HPLM_0000403401 I 0.000
L596_g1691 Steinernema carpocapsae L596_g1691 I 0.000
L889_g31510 Steinernema feltiae L889_g31510 I 0.000
L892_g20637 Steinernema scapterisci L892_g20637 I 0.000
L893_g13923 Steinernema glaseri L893_g13923 I 0.000
LOAG_04009 Loa loa LOAG_04009 I 0.000
maker-nMf.1.1.scaf00497-augustus-gene-0.10 Meloidogyne floridensis maker-nMf.1.1.scaf00497-augustus-gene-0.10 N 0.000
MhA1_Contig1499.frz3.gene12 Meloidogyne hapla MhA1_Contig1499.frz3.gene12 N 0.000
nAv.1.0.1.g08649 Acanthocheilonema viteae nAv.1.0.1.g08649 I 0.000
NBR_0001674501 Nippostrongylus brasiliensis NBR_0001674501 N 0.000
NECAME_09584 Necator americanus NECAME_09584 I 0.000
PPA14239 Pristionchus pacificus PPA14239 I 0.000
PTRK_0000045900 Parastrongyloides trichosuri PTRK_0000045900 I 0.000
SPAL_0000741800 Strongyloides papillosus SPAL_0000741800 I 0.000
SSTP_0001193100 Strongyloides stercoralis SSTP_0001193100 I 0.000
SVE_1023400 Strongyloides venezuelensis SVE_1023400 I 0.000
SVUK_0000327101 Strongylus vulgaris SVUK_0000327101 I 0.000
TELCIR_22084 Teladorsagia circumcincta TELCIR_22084 I 0.000
dmd-8 Caenorhabditis elegans WBGene00020708 D 0.000