Pbx2 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000000440 T215313_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
mouse homolog is a DNA binding partner with some Hox transcription factors and may regulate gene expression during early embryonic development [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867 1.000
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867 1.000
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867 1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867 0.982
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.867 0.965
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867 0.965
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867 0.965
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867 0.965
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867 0.965
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867 0.965
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867 0.965
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867 0.965
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867 0.965
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867 0.965
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867 0.965
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867 0.965
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867 0.965
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867 0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865 0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822 0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822 0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822 0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822 0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815 0.912
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815 0.912
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691 0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000000509 Homeodomain 245 304

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_03114 Capronia coronata A1O1_03114 I 0.000
A1O3_01974 Capronia epimyces A1O3_01974 I 0.000
A1O5_03439 Cladophialophora psammophila A1O5_03439 I 0.000
A1O7_04367 Cladophialophora yegresii A1O7_04367 I 0.000
A1O9_00612 Exophiala aquamarina A1O9_00612 I 0.000
ACLA_039140 Aspergillus clavatus CADACLAG00003633 N 0.000
ANIA_04873 Aspergillus nidulans CADANIAG00005532 I 0.000
ARB_05394 Arthroderma benhamiae ARB_05394 N 0.000
ATEG_04658 Aspergillus terreus CADATEAG00009335 I 0.000
Bcin02g07540 Botrytis cinerea Bcin02g07540 I 0.000
BDDG_07547 Blastomyces dermatitidis BDDG_07547 N 0.000
CADAFLAG00002515 Aspergillus flavus CADAFLAG00002515 I 0.000
CADANGAG00002216 Aspergillus niger CADANGAG00002216 I 0.000
CADAORAG00001279 Aspergillus oryzae CADAORAG00001279 I 0.000
CIMG_03820 Coccidioides immitis CIMG_03820 N 0.000
CPC735_005020 Coccidioides posadasii CPC735_005020 N 0.000
CTHT_0018750 Chaetomium thermophilum CTHT_0018750 I 0.000
EPUS_07921 Endocarpon pusillum EPUS_07921 I 0.000
estExt_fgenesh2_pg.C_80281 Neurospora discreta estExt_fgenesh2_pg.C_80281 I 0.000
EURHEDRAFT_515807 Aspergillus ruber EURHEDRAFT_515807 I 0.000
EV44_g6127 Erysiphe necator EV44_g6127 I 0.000
e_gw1.00866.172.1 Aspergillus carbonarius e_gw1.00866.172.1 I 0.000
F503_03781 Ophiostoma piceae uamh F503_03781 I 0.000
G647_04328 Cladophialophora carrionii G647_04328 I 0.000
GMDG_06980 Pseudogymnoascus destructans GMDG_06980 I 0.000
GSTUM_00007462001 Tuber melanosporum GSTUM_00007462001 I 0.000
H101_04757 Trichophyton interdigitale H101_04757 N 0.000
H102_07608 Trichophyton rubrum H102_07608 N 0.000
H105_07634 Trichophyton soudanense H105_07634 N 0.000
HCBG_07403 Histoplasma capsulatum HCBG_07403 N 0.000
HMPREF1120_06603 Exophiala dermatitidis HMPREF1120_06603 I 0.000
HMPREF1541_09309 Cyphellophora europaea HMPREF1541_09309 I 0.000
MBM_04034 Marssonina brunnea MBM_04034 I 0.000
MCYG_00678 Microsporum canis MCYG_00678 N 0.000
MCYG_00678 Arthroderma otae MCYG_00678 N 0.000
MGYG_01294 Microsporum gypseum MGYG_01294 N 0.000
MYCTH_2308260 Myceliophthora thermophila MYCTH_2308260 I 0.000
NCU06907 Neurospora crassa NCU06907 D 0.000
NEUTE1DRAFT_130988 Neurospora tetrasperma NEUTE1DRAFT_130988 I 0.000
NFIA_066040 Neosartorya fischeri CADNFIAG00006379 I 0.000
OIDMADRAFT_103771 Oidiodendron maius OIDMADRAFT_103771 I 0.000
PAAG_06537 Paracoccidioides sp lutzii PAAG_06537 N 0.000
PABG_02567 Paracoccidioides brasiliensis PABG_02567 N 0.000
Pc13g09500 Penicillium chrysogenum Pc13g09500 N 0.000
PCH_Pc13g09500 Penicillium rubens PCH_Pc13g09500 N 0.000
PDE_04896 Penicillium oxalicum PDE_04896 N 0.000
PDIP_29800 Penicillium digitatum PDIP_29800 N 0.000
PEX1_090700 Penicillium expansum PEX1_090700 N 0.000
PFICI_12570 Pestalotiopsis fici PFICI_12570 I 0.000
PITC_062120 Penicillium italicum PITC_062120 N 0.000
PMAA_023500 Talaromyces marneffei PMAA_023500 N 0.000
PMAA_023500 Penicillium marneffei PMAA_023500 N 0.000
PODANS_5_11890 Podospora anserina PODANS_5_11890 I 0.000
PV04_04915 Capronia semiimmersa PV04_04915 I 0.000
PV05_09372 Exophiala xenobiotica PV05_09372 I 0.000
PV06_04279 Exophiala oligosperma PV06_04279 I 0.000
PV07_07651 Cladophialophora immunda PV07_07651 I 0.000
PV08_10349 Exophiala spinifera PV08_10349 I 0.000
PV10_00143 Exophiala mesophila PV10_00143 I 0.000
PV11_04194 Exophiala sideris PV11_04194 I 0.000
PVAR5_7714 Byssochlamys spectabilis PVAR5_7714 I 0.000
SBOR_8019 Sclerotinia borealis SBOR_8019 I 0.000
SMAC_05878 Sordaria macrospora SMAC_05878 I 0.000
TEQG_05544 Trichophyton equinum TEQG_05544 N 0.000
TESG_05703 Trichophyton tonsurans TESG_05703 N 0.000
THITE_2117700 Thielavia terrestris THITE_2117700 I 0.000
TRV_03376 Trichophyton verrucosum TRV_03376 N 0.000
TSTA_031880 Talaromyces stipitatus TSTA_031880 N 0.000
U727_00433320351 Penicillium solitum U727_00433320351 N 0.000
V499_09093 Pseudogymnoascus pannorum V499_09093 I 0.000
Z517_12080 Fonsecaea pedrosoi Z517_12080 I 0.000
Z518_09813 Rhinocladiella mackenziei Z518_09813 I 0.000
Z519_10261 Cladophialophora bantiana Z519_10261 I 0.000