ENSXMAG00000003472 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000003472 T217151_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HNF1A
M03150_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1A_1 		0.822 0.945
HNF1A
M09144_2.00 		Homo sapiens
DGTTAATKATTAACH
DGTTAATMATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C 		0.822 0.945
HNF1A
M10690_2.00 		Homo sapiens
RGTTAATDWTTRMHV
BDKYAAWHATTAACY		 Transfac
Matys et al.(2006)
V$HNF1_01 		0.822 0.945
HNF1A
M10691_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q4 		0.822 0.945
HNF1A
M10692_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q5 		0.822 0.945
HNF1A
M10693_2.00 		Homo sapiens
DGBTAATBAWTHAMYWM
KWRKTDAWTVATTAVCH		 Transfac
Matys et al.(2006)
V$HNF1_C 		0.822 0.945
Hnf1b
M00408_2.00 		Mus musculus
NNHWCNNN
NNNGWDNN		 PBM
Berger et al.(2008)
Tcf2_0913 		0.821 0.909
HNF1B
M03245_2.00 		Homo sapiens
GTTAATNATTAAY
RTTAATNATTAAC		 SELEX
Jolma et al.(2013)
HNF1B_1 		0.821 0.909
HNF1B
M03246_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1B_2 		0.821 0.909
HNF1B
M09168_2.00 		Homo sapiens
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A 		0.821 0.909
Hnf1b
M09179_2.00 		Mus musculus
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A 		0.821 0.909
HNF1B
M10758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6_01 		0.821 0.909
HNF1B
M10759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6 		0.821 0.909
HNF1B
M10760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LFA1_Q6 		0.821 0.909
Hnf1a
M00171_2.00 		Mus musculus
HTAAYYNN
NNRRTTAD		 PBM
Badis et al.(2009)
Tcf1_2666 		0.815 0.927
Hnf1a
M00444_2.00 		Mus musculus
HTAAYYNNN
NNNRRTTAD		 PBM
Berger et al.(2008)
Tcf1_2666 		0.815 0.927
Hnf1a
M09191_2.00 		Mus musculus
RGTTAATNWTTDMHN
NDKHAAWNATTAACY		 Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A 		0.815 0.927
Hmbox1
M00419_2.00 		Mus musculus
NNNGWNNN
NNNWCNNN		 PBM
Berger et al.(2008)
Hmbox1_2674 		0.683 0.400
HMBOX1
M03167_2.00 		Homo sapiens
BKTAACTARB
VYTAGTTAMV		 SELEX
Jolma et al.(2013)
HMBOX1_1 		0.683 0.400
HMBOX1
M05180_2.00 		Homo sapiens
BTAACYAGB
VCTRGTTAV		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX 		0.683 0.400
HMBOX1
M05181_2.00 		Homo sapiens
NTAACTAGB
VCTAGTTAN		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX 		0.683 0.400
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000003492 Homeodomain 185 260

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000017984 Ailuropoda melanoleuca ENSAMEG00000017984 I 0.000
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I 0.000
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I 0.000
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I 0.000
ENSAPLG00000006203 Anas platyrhynchos ENSAPLG00000006203 I 0.000
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I 0.000
IRF6 Anolis carolinensis ENSACAG00000005931 I 0.000
Afo_R001981 Aptenodytes forsteri Afo_R001981 I 0.000
ENSAMXG00000004616 Astyanax mexicanus ENSAMXG00000004616 I 0.000
ENSP00000349770-D2 Bos grunniens ENSP00000349770-D2 I 0.000
IRF6 Bos taurus ENSBTAG00000002849 I 0.000
IRF6 Callithrix jacchus ENSCJAG00000015032 I 0.000
IRF6 Canis familiaris ENSCAFG00000011971 I 0.000
IRF6 Cavia porcellus ENSCPOG00000023829 I 0.000
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I 0.000
Cmyd_10010684 Chelonia mydas Cmyd_10010684 I 0.000
ENSCSAG00000015263 Chlorocebus sabaeus ENSCSAG00000015263 I 0.000
IRF6 Choloepus hoffmanni ENSCHOG00000010399 I 0.000
irf5 Danio rerio ENSDARG00000045681 I 0.000
irf6 Danio rerio ENSDARG00000101986 I 0.000
IRF6 Dasypus novemcinctus ENSDNOG00000001694 I 0.000
Irf6 Dipodomys ordii ENSDORG00000008891 I 0.000
IRF6 Echinops telfairi ENSETEG00000008368 I 0.000
IRF6 Equus caballus ENSECAG00000007482 I 0.000
IRF6 Felis catus ENSFCAG00000015138 I 0.000
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I 0.000
IRF6 Gallus gallus ENSGALG00000001405 D 0.000
irf6 Gasterosteus aculeatus ENSGACG00000000990 I 0.000
irf5 Gasterosteus aculeatus ENSGACG00000000695 I 0.000
IRF6 Gorilla gorilla ENSGGOG00000006214 I 0.000
IRF6 Homo sapiens ENSG00000117595 D 0.000
ENSSTOG00000028204 Ictidomys tridecemlineatus ENSSTOG00000028204 I 0.000
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I 0.000
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I 0.000
ENSLOCG00000011297 Lepisosteus oculatus ENSLOCG00000011297 I 0.000
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I 0.000
IRF6 Loxodonta africana ENSLAFG00000001374 I 0.000
ENSP00000355988 Macaca fascicularis ENSP00000355988 I 0.000
IRF6 Macaca mulatta ENSMMUG00000022065 I 0.000
ENSMEUG00000014941 Macropus eugenii ENSMEUG00000014941 I 0.000
IRF6 Meleagris gallopavo ENSMGAG00000004431 D 0.000
IRF6 Microcebus murinus ENSMICG00000001233 I 0.000
IRF6 Monodelphis domestica ENSMODG00000002539 I 0.000
ENSMPUG00000003106 Mustela putorius furo ENSMPUG00000003106 I 0.000
Irf6 Mus musculus ENSMUSG00000026638 D 0.000
Myotis_brandtii_IRF6_10012270 Myotis brandtii Myotis_brandtii_IRF6_10012270 I 0.000
IRF6 Myotis lucifugus ENSMLUG00000004509 I 0.000
ENSNLEG00000001962 Nomascus leucogenys ENSNLEG00000001962 I 0.000
IRF6 Ochotona princeps ENSOPRG00000014295 I 0.000
Ogr12956 Ophisaurus gracilis Ogr12956 I 0.000
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I 0.000
ENSONIG00000018961 Oreochromis niloticus ENSONIG00000018961 I 0.000
IRF6 Ornithorhynchus anatinus ENSOANG00000013718 I 0.000
IRF6 Oryctolagus cuniculus ENSOCUG00000004035 I 0.000
irf6 Oryzias latipes ENSORLG00000000511 I 0.000
IRF6 Otolemur garnettii ENSOGAG00000010708 I 0.000
ENSOARG00000012720 Ovis aries ENSOARG00000012720 I 0.000
ENSOARG00000020948 Ovis aries ENSOARG00000020948 I 0.000
IRF6 Pan troglodytes ENSPTRG00000001941 I 0.000
ENSPANG00000011328 Papio anubis ENSPANG00000011328 I 0.000
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I 0.000
ENSPFOG00000005876 Poecilia formosa ENSPFOG00000005876 I 0.000
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I 0.000
ENSPFOG00000014077 Poecilia formosa ENSPFOG00000014077 I 0.000
Pvit_14327 Pogona vitticeps Pvit_14327 I 0.000
Pvit_15428 Pogona vitticeps Pvit_15428 I 0.000
ENSPPYG00000000253 Pongo abelii ENSPPYG00000000253 I 0.000
IRF6 Procavia capensis ENSPCAG00000006456 I 0.000
IRF6 Pteropus vampyrus ENSPVAG00000004865 I 0.000
Irf6 Rattus norvegicus ENSRNOG00000005082 I 0.000
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I 0.000
IRF6 Sus scrofa ENSSSCG00000015612 I 0.000
IRF6 Taeniopygia guttata ENSTGUG00000001485 I 0.000
irf5 Takifugu rubripes ENSTRUG00000000641 I 0.000
irf6 Takifugu rubripes ENSTRUG00000006951 I 0.000
ENSTSYG00000010982 Tarsius syrichta ENSTSYG00000010982 I 0.000
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I 0.000
irf6 Tetraodon nigroviridis ENSTNIG00000014635 I 0.000
IRF6 Tursiops truncatus ENSTTRG00000001121 I 0.000
IRF6 Vicugna pacos ENSVPAG00000010247 I 0.000
irf6.2.L Xenopus laevis XB-GENE-5910427 I 0.000
irf6.S Xenopus laevis XB-GENE-876421 I 0.000
irf5.L Xenopus laevis XB-GENE-998629 D 0.000
irf6.2 Xenopus tropicalis XB-GENE-5910331 D 0.000
irf6 Xenopus tropicalis XB-GENE-876410 I 0.000
irf5 Xenopus tropicalis XB-GENE-998624 I 0.000
ENSXMAG00000007143 Xiphophorus maculatus ENSXMAG00000007143 I 0.000
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I 0.000