GE17244 (Drosophila yakuba)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0234722 T218339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.867 1.000
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN

NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.867 1.000
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA

TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.867 1.000
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW

WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.867 1.000
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR

YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.867 1.000
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN

NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.822 0.947
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR

YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.822 0.947
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN

NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.822 0.947
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND

HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.822 0.947
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN

NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.822 0.947
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG

CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.822 0.947
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.822 0.947
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN

NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.822 0.947
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC

GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.822 0.947
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT

AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.822 0.947
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB

VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.822 0.947
PBX1
M10750_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.822 0.947
PBX1
M10751_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.822 0.947
PBX1
M10752_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.822 0.947
PBX1
M10753_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.822 0.947
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG

CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.822 0.947
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH

DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.822 0.947
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV

BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.822 0.930
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN

NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.820 0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN

NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.770 0.895
PBX4
M10649_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.770 0.895
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN

NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.646 0.544
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN

NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.632 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0262254 Homeodomain 239 298

Links

Other Homeodomain family TFs
Other Drosophila yakuba TFs

433 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL002381 Aedes aegypti AAEL002381 N 0.000
AAEL011414 Aedes aegypti AAEL011414 N 0.000
AAEL011425 Aedes aegypti AAEL011425 I 0.000
AALB010797 Anopheles albimanus AALB010797 N 0.000
AARA003413 Anopheles arabiensis AARA003413 N 0.000
ACEP16595 Atta cephalotes ACEP16595 I 0.000
ACHR003270 Anopheles christyi ACHR003270 N 0.000
ACOM026236 Anopheles coluzzii ACOM026236 N 0.000
ACYPI006576 Acyrthosiphon pisum ACYPI006576 I 0.000
ADAC005122 Anopheles darlingi ADAC005122 N 0.000
ADIR000495 Anopheles dirus ADIR000495 N 0.000
AEPI002535 Anopheles epiroticus AEPI002535 N 0.000
AFUN009599 Anopheles funestus AFUN009599 N 0.000
AGAP012334 Anopheles gambiae AGAP012334 N 0.000
AMAM007083 Anopheles maculatus AMAM007083 N 0.000
AMEC017787 Anopheles melas AMEC017787 N 0.000
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.000
AQUA002990 Anopheles quadriannulatus AQUA002990 N 0.000
ASIS014204 Anopheles sinensis ASIS014204 N 0.000
A_01848 Schistosoma haematobium A_01848 N 0.000
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.000
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.000
BGIBMGA007393 Bombyx mori BGIBMGA007393 N 0.000
CapteG172235 Capitella teleta CapteG172235 I 0.000
CBN25379 Caenorhabditis brenneri CBN25379 I 0.000
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.000
CLEC003860 Cimex lectularius CLEC003860 I 0.000
CPIJ002952 Culex quinquefasciatus CPIJ002952 N 0.000
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.000
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.000
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N 0.000
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.000
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.000
EDI_049480 Entamoeba dispar EDI_049480 N 0.000
EHI_045480 Entamoeba histolytica EHI_045480 N 0.000
EMIHUDRAFT_49282 Emiliania huxleyi EMIHUDRAFT_49282 N 0.000
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.000
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.000
GA30453 Drosophila pseudoobscura FBgn0264590 N 0.000
GB54571 Apis mellifera GB54571 N 0.000
GD11622 Drosophila simulans FBgn0183362 N 0.000
GD25013 Drosophila simulans FBgn0196325 N 0.000
GD25171 Drosophila simulans FBgn0196483 I 0.000
GE11532 Drosophila yakuba FBgn0229332 N 0.000
GF11622 Drosophila ananassae FBgn0088662 I 0.000
GF12460 Drosophila ananassae FBgn0089497 N 0.000
GF13265 Drosophila ananassae FBgn0090297 N 0.000
GG19998 Drosophila erecta FBgn0112197 N 0.000
GG20749 Drosophila erecta FBgn0112936 I 0.000
GG22136 Drosophila erecta FBgn0114310 N 0.000
GH20784 Drosophila grimshawi FBgn0128247 I 0.000
GH21124 Drosophila grimshawi FBgn0128586 N 0.000
GH21151 Drosophila grimshawi FBgn0128613 N 0.000
GI18728 Drosophila mojavensis FBgn0141467 N 0.000
GI18750 Drosophila mojavensis FBgn0141489 N 0.000
GI20867 Drosophila mojavensis FBgn0143601 I 0.000
GJ20604 Drosophila virilis FBgn0207743 I 0.000
GJ21748 Drosophila virilis FBgn0208866 N 0.000
GJ21774 Drosophila virilis FBgn0208892 N 0.000
GK15658 Drosophila willistoni FBgn0217663 I 0.000
GK15924 Drosophila willistoni FBgn0217926 N 0.000
GK22092 Drosophila willistoni FBgn0224077 N 0.000
GL11071 Drosophila persimilis FBgn0148681 N 0.000
GL16947 Drosophila persimilis FBgn0154551 N 0.000
GL17523 Drosophila persimilis FBgn0155126 I 0.000
GM13209 Drosophila sechellia FBgn0168140 N 0.000
GM15692 Drosophila sechellia FBgn0170608 I 0.000
GM15859 Drosophila sechellia FBgn0170775 N 0.000
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.000
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.000
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.000
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.000
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.000
HMEL015307 Heliconius melpomene HMEL015307 N 0.000
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.000
HmgD Drosophila yakuba FBgn0068146 N 0.000
HmgD Drosophila melanogaster FBgn0004362 N 0.000
HmgZ Drosophila yakuba FBgn0068145 I 0.000
HmgZ Drosophila melanogaster FBgn0010228 I 0.000
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.000
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.000
KGM_13851 Danaus plexippus KGM_13851 N 0.000
KGM_13852 Danaus plexippus KGM_13852 I 0.000
L798_13679 Zootermopsis nevadensis L798_13679 N 0.000
LCUP005047 Lucilia cuprina LCUP005047 N 0.000
LCUP016801 Lucilia cuprina LCUP016801 N 0.000
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.000
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.000
MCINX001064 Melitaea cinxia MCINX001064 I 0.000
MDOA007633 Musca domestica MDOA007633 N 0.000
MDOA009531 Musca domestica MDOA009531 N 0.000
MDOA014797 Musca domestica MDOA014797 I 0.000
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.000
Minc03634 Meloidogyne incognita Minc03634 N 0.000
Minc04648 Meloidogyne incognita Minc04648 N 0.000
ML09221a Mnemiopsis leidyi ML09221a N 0.000
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.000
NECAME_16525 Necator americanus NECAME_16525 N 0.000
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.000
NV15871 Nasonia vitripennis NV15871 N 0.000
PHUM125270 Pediculus humanus PHUM125270 N 0.000
Pm006054 Prunus mume Pm006054 I 0.000
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.000
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.000
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.000
RPRC006380 Rhodnius prolixus RPRC006380 I 0.000
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.000
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N 0.000
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N 0.000
Smp_148930 Schistosoma mansoni Smp_148930 N 0.000
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N 0.000
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N 0.000
Ssrp Drosophila melanogaster FBgn0010278 N 0.000
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.000
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.000
TC012866 Tribolium castaneum TC012866 N 0.000
TCM_007659 Theobroma cacao TCM_007659 I 0.000
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.000
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.000