CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LotgiG160791
(
Lottia gigantea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
LotgiG160791
T220116_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
prd-b
M02077_2.00
Ciona intestinalis
NTRATTRNN
NNYAATYAN
PBM
Weirauch et al.(2014)
pTH6284
0.657
0.404
SNAPOd2T00006620001
M02231_2.00
Oikopleura dioica
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5666
0.639
0.456
Q4RRY4_TETNG
M02169_2.00
Tetraodon nigroviridis
NNYAATYAN
NTRATTRNN
PBM
Weirauch et al.(2014)
pTH6326
0.616
0.439
ENSTNIG00000017092
M02109_2.00
Tetraodon nigroviridis
YYAATCAD
HTGATTRR
PBM
Weirauch et al.(2014)
pTH6064
0.605
0.386
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LotgiP160791
Homeodomain
122
178
RGNRTNYSRKQIEVLERMFSFKAYPDPENFERLEKELGIAMKSIKVWFQNKRARSRK
Links
Other
Homeodomain
family TFs
Other
Lottia gigantea
TFs
143 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy