CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ML014416a
(
Mnemiopsis leidyi
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ML014416a
T220607_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VAX2
M00284_2.00
Homo sapiens
NNTAATND
HNATTANN
PBM
Barrera et al.(2016)
VAX2_REF
0.619
0.526
Vax1
M00398_2.00
Mus musculus
NTAATNDNN
NNHNATTAN
PBM
Berger et al.(2008)
Vax1_3499
0.619
0.526
Vax2
M00464_2.00
Mus musculus
NTAATDDNN
NNHHATTAN
PBM
Berger et al.(2008)
Vax2_3500
0.619
0.526
VAX2
M03119_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX2_1
0.619
0.526
VAX2
M05030_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_HT-SELEX
0.619
0.526
Vax1
M10764_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$VAX1_04
0.619
0.526
VAX2
M05031_2.00
Homo sapiens
BTAATTRV
BYAATTAV
SELEX
Yin et al.(2017)
VAX2_FL_Methyl-HT-SELEX
0.619
0.526
VAX2
M00283_2.00
Homo sapiens
NNTAAWNDNN
NNHNWTTANN
PBM
Barrera et al.(2016)
VAX2_L139M
0.613
0.509
Q86SD7_PODCA
M02213_2.00
Podocoryne carnea
NNTAATTADN
NHTAATTANN
PBM
Weirauch et al.(2014)
pTH6136
0.608
0.439
ceh-5
M02179_2.00
Caenorhabditis elegans
NNTAATDDN
NHHATTANN
PBM
Weirauch et al.(2014)
pTH6562
0.606
0.526
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ML014416a-PA
Homeodomain
89
145
KRFRSSFSTEQLRTMEDTFRHRPYLSTAQVEELAGNLALSSRQVKIWFQNRRTKLKK
Links
Other
Homeodomain
family TFs
Other
Mnemiopsis leidyi
TFs
161 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy