CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NEMVEDRAFT_v1g127828
(
Nematostella vectensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
NEMVEDRAFT_v1g127828
T220992_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ceh-22
M00376_2.00
Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW
PBM
Berger et al.(2006)
Ceh-22
0.643
0.807
Nkx2-1
M00385_2.00
Mus musculus
NNRAGDRN
NYHCTYNN
PBM
Berger et al.(2008)
Titf1_1722
0.628
0.754
Nkx2-4
M00514_2.00
Mus musculus
NNRAGDRBNN
NNVYHCTYNN
PBM
Berger et al.(2008)
Nkx2-4_3074
0.628
0.754
NKX2-1
M09146_2.00
Homo sapiens
BTKGAGWGBN
NVCWCTCMAV
Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A
0.628
0.754
Nkx2-1
M09171_2.00
Mus musculus
NBTKGAGWGB
VCWCTCMAVN
Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A
0.628
0.754
Nkx2-1
M09563_2.00
Mus musculus
BTBRAGWGBH
DVCWCTYVAV
Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252
0.628
0.754
NKX2-1
M10694_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TITF1_Q3
0.628
0.754
NKX2-1
M10695_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5_01
0.628
0.754
NKX2-1
M10696_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q5
0.628
0.754
NKX2-1
M10697_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TTF1_Q6
0.628
0.754
vnd
M06551_2.00
Drosophila melanogaster
WYTCAAGTR
YACTTGARW
B1H
Mathelier et al.(2014)
MA0253.1
0.625
0.807
vnd
M06377_2.00
Drosophila melanogaster
WYTCAAGTR
YACTTGARW
B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986
0.625
0.807
vnd
M06378_2.00
Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM
B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986
0.625
0.807
vnd
M06379_2.00
Drosophila melanogaster
BTBAAGTR
YACTTVAV
B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986
0.625
0.807
vnd
M09683_2.00
Drosophila melanogaster
TCAAGTGB
VCACTTGA
Misc
Kulakovskiy et al.(2009)
vnd
0.625
0.807
Nkx2-2
M00438_2.00
Mus musculus
NNNRAGDRN
NYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-2_2823
0.625
0.789
Nkx2-2
M09190_2.00
Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN
Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A
0.625
0.789
NKX2-2
M10681_2.00
Homo sapiens
WTAAGTRBTT
AAVYACTTAW
Transfac
Matys et al.(2006)
V$NKX22_01
0.625
0.789
NKX2-2
M10682_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3_01
0.625
0.789
NKX2-2
M10683_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX2B_Q3
0.625
0.789
scro
M03854_2.00
Drosophila melanogaster
NNBRMGTGB
VCACKYVNN
SELEX
Nitta et al.(2015)
scro_1
0.621
0.772
Nkx2-9
M00520_2.00
Mus musculus
NNNRAGDRBN
NVYHCTYNNN
PBM
Berger et al.(2008)
Nkx2-9_3082
0.618
0.789
Nkx2-9
M00800_2.00
Mus musculus
NNRAGDRBNN
NNVYHCTYNN
PBM
Weirauch et al.(2013)
pTH2842
0.618
0.789
Nkx2-9
M09215_2.00
Mus musculus
BTCAAGKRB
VYMCTTGAV
Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C
0.618
0.789
ceh-24
M02181_2.00
Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN
PBM
Weirauch et al.(2014)
pTH6327
0.616
0.719
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO33947
Homeodomain
3
59
RKRRILFTKSQIYELERRFRYQRYLSAPEREQLGRMINLTPTQVKIWFQNHRYKHKK
Links
Other
Homeodomain
family TFs
Other
Nematostella vectensis
TFs
486 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy