ORGLA01G0305600 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA01G0305600 T221807_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA

TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.759 0.719
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW

WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.759 0.719
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA

TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.619 0.439
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN

NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.619 0.439
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV

BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.606 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0305600.1 Homeodomain 41 102

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

514 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA025935 Oryza indica BGIOSGA025935 N 0.000
BRADI1G24940 Brachypodium distachyon BRADI1G24940 N 0.000
F775_32964 Aegilops tauschii F775_32964 N 0.000
GRMZM2G032071 Zea mays GRMZM2G032071 N 0.000
GRMZM2G108272 Zea mays GRMZM2G108272 N 0.000
GRMZM2G415012 Zea mays GRMZM2G415012 N 0.000
LPERR07G15880 Leersia perrieri LPERR07G15880 N 0.000
MLOC_71715 Hordeum vulgare MLOC_71715 N 0.000
OB07G24200 Oryza brachyantha OB07G24200 N 0.000
OBART07G18420 Oryza barthii OBART07G18420 N 0.000
OGLUM07G18220 Oryza glumaepatula OGLUM07G18220 N 0.000
OLONG_006976 Oryza longistaminata OLONG_006976 N 0.000
OMERI07G15310 Oryza meridionalis OMERI07G15310 N 0.000
ONIVA07G16850 Oryza nivara ONIVA07G16850 N 0.000
OPUNC07G17320 Oryza punctata OPUNC07G17320 N 0.000
ORGLA07G0148500 Oryza glaberrima ORGLA07G0148500 N 0.000
ORUFI07G19160 Oryza rufipogon ORUFI07G19160 N 0.000
OS07G0557500 Oryza sativa OS07G0557500 N 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
Pavir.Bb03053 Panicum virgatum Pavir.Bb03053 N 0.000
Pavir.J31665 Panicum virgatum Pavir.J31665 N 0.000
Sb02g036200 Sorghum bicolor Sb02g036200 N 0.000
Si029184m.g Setaria italica Si029184m.g N 0.000
Traes_2BS_3ADAEBB61 Triticum aestivum Traes_2BS_3ADAEBB61 N 0.000
Traes_2DS_9DC4D07BB Triticum aestivum Traes_2DS_9DC4D07BB N 0.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.000