PCH_Pc22g12270 (Penicillium rubens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PCH_Pc22g12270 T222105_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
unc-62
M02185_2.00
Caenorhabditis elegans
NHDAHANNN

NNNTDTHDN
PBM
Weirauch et al.(2014)
pTH5781
0.728 0.564
Pknox2
M00468_2.00
Mus musculus
NNNGACRNNN

NNNYGTCNNN
PBM
Berger et al.(2008)
Pknox2_3077
0.704 0.509
PKNOX2
M03195_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX2_1
0.704 0.509
Pknox2
M03270_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Pknox2_1
0.704 0.509
PKNOX2
M05246_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX
0.704 0.509
PKNOX2
M05247_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX
0.704 0.509
Pknox1
M00399_2.00
Mus musculus
HGACRNNN

NNNYGTCD
PBM
Berger et al.(2008)
Pknox1_2364
0.704 0.491
PKNOX1
M03178_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
PKNOX1_1
0.704 0.491
PKNOX1
M05206_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX
0.704 0.491
PKNOX1
M05208_2.00
Homo sapiens
TGACAGCTGTCA

TGACAGCTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX
0.704 0.491
PKNOX1
M09150_2.00
Homo sapiens
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B
0.704 0.491
Pknox1
M09175_2.00
Mus musculus
TGABTGRCRGV

BCYGYCAVTCA
Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A
0.704 0.491
PKNOX1
M10712_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PREP1_Q3
0.704 0.491
PKNOX1
M05207_2.00
Homo sapiens
YGWCASSTGWCR

YGWCASSTGWCR
SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX
0.704 0.491
PKNOX1
M05209_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX
0.704 0.491
Meis1
M00407_2.00
Mus musculus
NTGACADNN

NNHTGTCAN
PBM
Berger et al.(2008)
Meis1_2335
0.695 0.564
Meis2
M00437_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg1_2246
0.695 0.564
Meis3
M00488_2.00
Mus musculus
NTGACANNN

NNNTGTCAN
PBM
Berger et al.(2008)
Mrg2_2302
0.695 0.564
MEIS1
M03165_2.00
Homo sapiens
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
MEIS1_1
0.695 0.564
MEIS2
M03147_2.00
Homo sapiens
WTGACAGSTGTCAM

KTGACASCTGTCAW
SELEX
Jolma et al.(2013)
MEIS2_1
0.695 0.564
MEIS2
M03148_2.00
Homo sapiens
DTGACAGS

SCTGTCAH
SELEX
Jolma et al.(2013)
MEIS2_2
0.695 0.564
Meis2
M03261_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis2_1
0.695 0.564
Meis2
M03262_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis2_2
0.695 0.564
Meis3
M03279_2.00
Mus musculus
NTGACAN

NTGTCAN
SELEX
Jolma et al.(2013)
Meis3_1
0.695 0.564
Meis3
M03280_2.00
Mus musculus
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
Meis3_2
0.695 0.564
MEIS2
M02740_2.00
Homo sapiens
TGACASSTGTC

GACASSTGTCA
SELEX
Jolma et al.(2010)
MEIS2_dimer
0.695 0.564
MEIS2
M02741_2.00
Homo sapiens
GGACAKNT

ANMTGTCC
SELEX
Jolma et al.(2010)
MEIS2_monomer
0.695 0.564
MEIS2
M05138_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX
0.695 0.564
MEIS2
M05140_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX
0.695 0.564
hth
M06490_2.00
Drosophila melanogaster
TGACAK

MTGTCA
B1H
Mathelier et al.(2014)
MA0227.1
0.695 0.564
hth
M06252_2.00
Drosophila melanogaster
TGTCA

TGACA
B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235
0.695 0.564
hth
M06253_2.00
Drosophila melanogaster
NNTGACAD

HTGTCANN
B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235
0.695 0.564
hth
M06254_2.00
Drosophila melanogaster
NTGACA

TGTCAN
B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235
0.695 0.564
MEIS1
M09148_2.00
Homo sapiens
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A
0.695 0.564
MEIS2
M09143_2.00
Homo sapiens
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B
0.695 0.564
Meis1
M09178_2.00
Mus musculus
NTGATTDATDDB

VHHATHAATCAN
Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A
0.695 0.564
Meis2
M09189_2.00
Mus musculus
HTGACAGBTKTBM

KVAMAVCTGTCAD
Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B
0.695 0.564
Meis1
M09568_2.00
Mus musculus
VBTGWCASNN

NNSTGWCAVB
Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085
0.695 0.564
MEIS1
M10709_2.00
Homo sapiens
NHNTGACAGNDN

NHNCTGTCANDN
Transfac
Matys et al.(2006)
V$MEIS1_01
0.695 0.564
MEIS1
M10710_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEIS1_06
0.695 0.564
MEIS2
M05139_2.00
Homo sapiens
YGACASSYGHCR

YGDCRSSTGTCR
SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX
0.695 0.564
MEIS2
M05141_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX
0.695 0.564
Tgif1
M00500_2.00
Mus musculus
NNTGACANNN

NNNTGTCANN
PBM
Berger et al.(2008)
Tgif1_2342
0.669 0.527
TGIF1
M03223_2.00
Homo sapiens
TGACAGCTGTCA

TGACAGCTGTCA
SELEX
Jolma et al.(2013)
TGIF1_1
0.669 0.527
TGIF1
M05317_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Yin et al.(2017)
TGIF1_eDBD_HT-SELEX
0.669 0.527
TGIF1
M09159_2.00
Homo sapiens
TGACAGS

SCTGTCA
Misc
Kulakovskiy et al.(2013)
TGIF1_HUMAN.H11MO.0.A
0.669 0.527
Tgif1
M09211_2.00
Mus musculus
TGACAGBNV

BNVCTGTCA
Misc
Kulakovskiy et al.(2013)
TGIF1_MOUSE.H11MO.0.A
0.669 0.527
TGIF1
M10740_2.00
Homo sapiens
WHNTGACARST

ASYTGTCANDW
Transfac
Matys et al.(2006)
V$TGIF_01
0.669 0.527
TGIF1
M05318_2.00
Homo sapiens
TGACAKVTGTCA

TGACABMTGTCA
SELEX
Yin et al.(2017)
TGIF1_eDBD_Methyl-HT-SELEX
0.669 0.527
Tgif2
M00521_2.00
Mus musculus
NNTGACANNN

NNNTGTCANN
PBM
Berger et al.(2008)
Tgif2_3451
0.636 0.527
TGIF2
M03123_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
TGIF2_1
0.636 0.527
TGIF2
M05032_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2_eDBD_HT-SELEX
0.636 0.527
TGIF2
M05034_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Yin et al.(2017)
TGIF2_FL_HT-SELEX
0.636 0.527
TGIF2
M05033_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
TGIF2_eDBD_Methyl-HT-SELEX
0.636 0.527
TGIF2
M05035_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Yin et al.(2017)
TGIF2_FL_Methyl-HT-SELEX
0.636 0.527
achi
M03860_2.00
Drosophila melanogaster
TGACAD

HTGTCA
SELEX
Nitta et al.(2015)
achi_1
0.621 0.436
achi
M03861_2.00
Drosophila melanogaster
TGACAGMTGTCA

TGACAKCTGTCA
SELEX
Nitta et al.(2015)
achi_2
0.621 0.436
achi
M03862_2.00
Drosophila melanogaster
TGACAGNNNNNNYGTCA

TGACRNNNNNNCTGTCA
SELEX
Nitta et al.(2015)
achi_3
0.621 0.436
vis
M03859_2.00
Drosophila melanogaster
TGACAS

STGTCA
SELEX
Nitta et al.(2015)
vis_1
0.621 0.436
vis
M06534_2.00
Drosophila melanogaster
TGACAB

BTGTCA
B1H
Mathelier et al.(2014)
MA0252.1
0.621 0.436
achi
M06535_2.00
Drosophila melanogaster
TGACAG

CTGTCA
B1H
Mathelier et al.(2014)
MA0207.1
0.621 0.436
achi
M06345_2.00
Drosophila melanogaster
TGTCADW

WHTGACA
B1H
Zhu et al.(2011)
Achi_Cell_FBgn0033749
0.621 0.436
achi
M06346_2.00
Drosophila melanogaster
HTGACA

TGTCAD
B1H
Zhu et al.(2011)
Achi_SOLEXA_FBgn0033749
0.621 0.436
vis
M06343_2.00
Drosophila melanogaster
TGTCA

TGACA
B1H
Zhu et al.(2011)
Vis_Cell_FBgn0033748
0.621 0.436
vis
M06344_2.00
Drosophila melanogaster
TGTCAD

HTGACA
B1H
Zhu et al.(2011)
Vis_SOLEXA_FBgn0033748
0.621 0.436
TGIF2LX
M03171_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
TGIF2LX_1
0.613 0.582
TGIF2LX
M05191_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_eDBD_HT-SELEX
0.613 0.582
TGIF2LX
M05193_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_FL_HT-SELEX
0.613 0.582
TGIF2LX
M05192_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_eDBD_Methyl-HT-SELEX
0.613 0.582
TGIF2LX
M05194_2.00
Homo sapiens
TGACASSTGTCA

TGACASSTGTCA
SELEX
Yin et al.(2017)
TGIF2LX_FL_Methyl-HT-SELEX
0.613 0.582
TGIF2LY
M05313_2.00
Homo sapiens
TGACABVTGTCA

TGACABVTGTCA
SELEX
Yin et al.(2017)
TGIF2LY_eDBD_HT-SELEX
0.613 0.564
TGIF2LY
M05314_2.00
Homo sapiens
YGACABVTGTCR

YGACABVTGTCR
SELEX
Yin et al.(2017)
TGIF2LY_eDBD_Methyl-HT-SELEX
0.613 0.564
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CAP98515 Homeodomain 214 271

Links

Other Homeodomain family TFs
Other Penicillium rubens TFs

793 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
M378DRAFT_34186 Amanita muscaria M378DRAFT_34186 N 0.000
FIBRA_07597 Fibroporia radiculosa FIBRA_07597 N 0.000
GLOTRDRAFT_112363 Gloeophyllum trabeum GLOTRDRAFT_112363 N 0.000
GYMLUDRAFT_174618 Gymnopus luxurians GYMLUDRAFT_174618 N 0.000
M413DRAFT_13613 Hebeloma cylindrosporum M413DRAFT_13613 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000
estExt_fgenesh3_kg.C_80174 Heterobasidion annosum estExt_fgenesh3_kg.C_80174 N 0.000
HETIRDRAFT_147959 Heterobasidion irregulare HETIRDRAFT_147959 N 0.000
JAAARDRAFT_103126 Jaapia argillacea JAAARDRAFT_103126 N 0.000
MVLG_00837 Microbotryum violaceum MVLG_00837 N 0.000
Moror_1174 Moniliophthora roreri Moror_1174 N 0.000
Moror_346 Moniliophthora roreri Moror_346 N 0.000
Moror_572 Moniliophthora roreri Moror_572 N 0.000
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N 0.000
e_gww2.5.562.1 Phanerochaete chrysosporium e_gww2.5.562.1 N 0.000
PHLGIDRAFT_16085 Phlebiopsis gigantea PHLGIDRAFT_16085 N 0.000
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N 0.000
PILCRDRAFT_33349 Piloderma croceum PILCRDRAFT_33349 N 0.000
PISMIDRAFT_650733 Pisolithus microcarpus PISMIDRAFT_650733 N 0.000
M404DRAFT_1002106 Pisolithus tinctorius M404DRAFT_1002106 N 0.000
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N 0.000
POSPLDRAFT_47293 Postia placenta POSPLDRAFT_47293 N 0.000
POSPLDRAFT_60615 Postia placenta POSPLDRAFT_60615 N 0.000
RHTO_01077 Rhodosporidium toruloides RHTO_01077 N 0.000
RTG_00969 Rhodotorula glutinis RTG_00969 N 0.000
SCHCODRAFT_86194 Schizophyllum commune SCHCODRAFT_86194 N 0.000
SCLCIDRAFT_36428 Scleroderma citrinum SCLCIDRAFT_36428 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
M422DRAFT_147299 Sphaerobolus stellatus M422DRAFT_147299 N 0.000
CY34DRAFT_809277 Suillus luteus CY34DRAFT_809277 N 0.000