CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc08g083130.2
(
Solanum lycopersicum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Solyc08g083130.2
T223614_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.695
0.754
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.695
0.754
Q39944_HELAN
M10802_2.00
Helianthus annuus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.643
0.737
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc08g083130.2.1
Homeodomain
21
77
DNMRRRFNDEQIKSLENMFETESRPELRTKQQLAKRLGLQPRQVAIWFQNKRARSKS
Links
Other
Homeodomain
family TFs
Other
Solanum lycopersicum
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy