CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG001661.1
(
Alligator sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Alligator_sinensis_CCG001661.1
T225158_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Barx2
M00457_2.00
Mus musculus
NTAABNDNN
NNHNVTTAN
PBM
Berger et al.(2008)
Barx2_3447
0.497
1.000
BARX2
M04915_2.00
Homo sapiens
NTAAYKRTTWWN
NWWAAYMRTTAN
SELEX
Yin et al.(2017)
BARX2_FL_HT-SELEX
0.497
1.000
BARX2
M04916_2.00
Homo sapiens
NTAAYKRTTWWN
NWWAAYMRTTAN
SELEX
Yin et al.(2017)
BARX2_FL_Methyl-HT-SELEX
0.497
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG001661.1
Homeodomain
1
45
MGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKK
Links
Other
Homeodomain
family TFs
Other
Alligator sinensis
TFs
746 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy