CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_11713
(
Pogona vitticeps
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pvit_11713
T226778_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.722
0.435
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.722
0.435
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.722
0.435
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.722
0.435
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.722
0.435
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.722
0.435
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.722
0.435
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.722
0.435
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.722
0.435
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.685
0.522
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.685
0.522
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.685
0.522
Evx2
M00393_2.00
Mus musculus
NNTAAYNN
NNRTTANN
PBM
Berger et al.(2008)
Evx2_2645
0.377
1.000
Evx1
M00395_2.00
Mus musculus
NTAATBDNN
NNHVATTAN
PBM
Berger et al.(2008)
Evx1_3952
0.377
1.000
EVX1
M03102_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX1_1
0.377
1.000
EVX2
M03215_2.00
Homo sapiens
NNTAATBRBN
NVYVATTANN
SELEX
Jolma et al.(2013)
EVX2_1
0.377
1.000
EVX1
M04985_2.00
Homo sapiens
VTAATKAB
VTMATTAB
SELEX
Yin et al.(2017)
EVX1_eDBD_HT-SELEX
0.377
1.000
EVX2
M05295_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_HT-SELEX
0.377
1.000
EVX2
M09158_2.00
Homo sapiens
NBTTTATKRCHNN
NNDGYMATAAAVN
Misc
Kulakovskiy et al.(2013)
EVX2_HUMAN.H11MO.0.A
0.377
1.000
Evx1
M09174_2.00
Mus musculus
WGATTTATDRBHN
NDVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
EVX1_MOUSE.H11MO.0.C
0.377
1.000
Evx2
M09173_2.00
Mus musculus
BTTTATKRCHBN
NVDGYMATAAAV
Misc
Kulakovskiy et al.(2013)
EVX2_MOUSE.H11MO.0.A
0.377
1.000
EVX2
M10736_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EVX2_04
0.377
1.000
EVX1
M04986_2.00
Homo sapiens
NTMATKAN
NTMATKAN
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_1
0.377
1.000
EVX1
M04987_2.00
Homo sapiens
HTWAYGAB
VTCRTWAD
SELEX
Yin et al.(2017)
EVX1_eDBD_Methyl-HT-SELEX_2
0.377
1.000
EVX2
M05296_2.00
Homo sapiens
NTAATKAN
NTMATTAN
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_1
0.377
1.000
EVX2
M05297_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
EVX2_eDBD_Methyl-HT-SELEX_2
0.377
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_11713
Homeodomain
183
228
RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKV
Links
Other
Homeodomain
family TFs
Other
Pogona vitticeps
TFs
1327 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy