CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Q0UJ27_PHANO_CONSTRUCT
(
PBM CONSTRUCTS
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Q0UJ27_PHANO_CONSTRUCT
T226935_2.00
HughesLab (2013-Jun-13)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q0UJ27_PHANO_CONSTRUCT
M02202_2.00
PBM CONSTRUCTS
NYAATHWNN
NNWDATTRN
PBM
Weirauch et al.(2014)
pTH6773
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU09556
M02226_2.00
Neurospora crassa
TTAATWTA
TAWATTAA
PBM
Weirauch et al.(2014)
pTH8955
0.776
0.909
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02202_2.00
Homeodomain
1
56
KRFRLTHNQTRFLMSEFARQAHPDAAHRERLAREIPGLSPRQVQVWFQNRRAKLKR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q0UJ27_PHANO_CONSTRUCT
Homeodomain
1
56
KRFRLTHNQTRFLMSEFARQAHPDAAHRERLAREIPGLSPRQVQVWFQNRRAKLKR
Links
Other
Homeodomain
family TFs
Other
PBM CONSTRUCTS
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy