29848.m004577 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29848.m004577 T226987_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.867 1.000
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.867 0.979
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.861 0.875
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.830 0.875
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721 0.479
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663 0.458
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663 0.458
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663 0.458
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663 0.458
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29848.m004577 Homeodomain 360 410

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

511 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CpipJ_CPIJ004942 Culex pipiens CpipJ_CPIJ004942 N 0.000
AEPI006555 Anopheles epiroticus AEPI006555 N 0.000
AFAF017626 Anopheles farauti AFAF017626 N 0.000
AFUN007619 Anopheles funestus AFUN007619 N 0.000
AMEM004343 Anopheles merus AMEM004343 N 0.000
AMIN011079 Anopheles minimus AMIN011079 N 0.000
AQUA001998 Anopheles quadriannulatus AQUA001998 N 0.000
ASIS016995 Anopheles sinensis ASIS016995 N 0.000
ASTEI11144 Anopheles stephensi ASTEI11144 N 0.000
LLOJ004221 Lutzomyia longipalpis LLOJ004221 N 0.000
ADIR007884 Anopheles dirus ADIR007884 N 0.000
ACUA007503 Anopheles culicifacies ACUA007503 N 0.000
AAEL018272 Aedes aegypti AAEL018272 N 0.000
ADAC001629 Anopheles darlingi ADAC001629 N 0.000
AGAP007065 Anopheles gambiae AGAP007065 N 0.000
KGM_04877 Danaus plexippus KGM_04877 N 0.000
AALB004995 Anopheles albimanus AALB004995 N 0.000
AARA005643 Anopheles arabiensis AARA005643 N 0.000
AATE008979 Anopheles atroparvus AATE008979 N 0.000
ACHR001181 Anopheles christyi ACHR001181 N 0.000
ACOM031297 Anopheles coluzzii ACOM031297 N 0.000
PPAI001918 Phlebotomus papatasi PPAI001918 N 0.000