CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29848.m004577
(
Ricinus communis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
29848.m004577
T226987_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.867
1.000
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.867
0.979
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST
ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.861
0.875
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN
NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.830
0.875
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721
0.479
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663
0.458
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663
0.458
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663
0.458
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663
0.458
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29848.m004577
Homeodomain
360
410
GDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW
Links
Other
Homeodomain
family TFs
Other
Ricinus communis
TFs
511 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CpipJ_CPIJ004942
Culex pipiens
CpipJ_CPIJ004942
N
0.000
AEPI006555
Anopheles epiroticus
AEPI006555
N
0.000
AFAF017626
Anopheles farauti
AFAF017626
N
0.000
AFUN007619
Anopheles funestus
AFUN007619
N
0.000
AMEM004343
Anopheles merus
AMEM004343
N
0.000
AMIN011079
Anopheles minimus
AMIN011079
N
0.000
AQUA001998
Anopheles quadriannulatus
AQUA001998
N
0.000
ASIS016995
Anopheles sinensis
ASIS016995
N
0.000
ASTEI11144
Anopheles stephensi
ASTEI11144
N
0.000
LLOJ004221
Lutzomyia longipalpis
LLOJ004221
N
0.000
ADIR007884
Anopheles dirus
ADIR007884
N
0.000
ACUA007503
Anopheles culicifacies
ACUA007503
N
0.000
AAEL018272
Aedes aegypti
AAEL018272
N
0.000
ADAC001629
Anopheles darlingi
ADAC001629
N
0.000
AGAP007065
Anopheles gambiae
AGAP007065
N
0.000
KGM_04877
Danaus plexippus
KGM_04877
N
0.000
AALB004995
Anopheles albimanus
AALB004995
N
0.000
AARA005643
Anopheles arabiensis
AARA005643
N
0.000
AATE008979
Anopheles atroparvus
AATE008979
N
0.000
ACHR001181
Anopheles christyi
ACHR001181
N
0.000
ACOM031297
Anopheles coluzzii
ACOM031297
N
0.000
PPAI001918
Phlebotomus papatasi
PPAI001918
N
0.000