29848.m004577 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29848.m004577 T226987_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.867 1.000
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.867 0.979
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.861 0.875
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.830 0.875
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721 0.479
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663 0.458
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663 0.458
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663 0.458
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663 0.458
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29848.m004577 Homeodomain 360 410

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

511 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL011425 Aedes aegypti AAEL011425 I 0.000
F775_29723 Aegilops tauschii F775_29723 I 0.000
G647_10093 Cladophialophora carrionii G647_10093 I 0.000
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.000
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.000
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.000
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.000
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.000
PV11_09703 Exophiala sideris PV11_09703 I 0.000
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.000
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.000
mgf024995m Mimulus guttatus mgf024995m I 0.000
AABR07009373.1 Rattus norvegicus ENSRNOG00000011429 I 0.000
ETH_00027140 Eimeria tenella ETH_00027140 I 0.000
A1O1_01197 Capronia coronata A1O1_01197 I 0.000
A1O3_08778 Capronia epimyces A1O3_08778 I 0.000
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.000
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.000
PV08_04655 Exophiala spinifera PV08_04655 I 0.000
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.000
PV06_04154 Exophiala oligosperma PV06_04154 I 0.000
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.000
SSRP1-B Oryza sativa OS05G0182600 N 0.000
PPA14042 Pristionchus pacificus PPA14042 N 0.000
Si000646m.g Setaria italica Si000646m.g N 0.000
Si021575m.g Setaria italica Si021575m.g N 0.000
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.000
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.000
Si024096m.g Setaria italica Si024096m.g N 0.000
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.000
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.000
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.000
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.000
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.000
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.000
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.000
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.000
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.000
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.000
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.000
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.000
SSRP1-A Oryza sativa OS01G0184900 N 0.000
OB01G15440 Oryza brachyantha OB01G15440 N 0.000
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.000
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.000
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.000
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.000
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.000
F775_28104 Aegilops tauschii F775_28104 N 0.000
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.000
BRADI2G05430 Brachypodium distachyon BRADI2G05430 N 0.000
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.000
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.000
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.000
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.000
OB05G15230 Oryza brachyantha OB05G15230 N 0.000
OBART01G05540 Oryza barthii OBART01G05540 N 0.000
OBART05G05520 Oryza barthii OBART05G05520 N 0.000
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.000
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.000
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.000
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.000
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.000
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.000
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.000
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.000
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.000
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.000
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.000
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.000
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.000
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.000