CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cucsa.359250
(
Cucumis sativus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Cucsa.359250
T227229_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.359250.1
Homeodomain
83
139
KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKA
Cucsa.359250.2
Homeodomain
83
139
KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKA
Cucsa.359250.3
Homeodomain
83
139
KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKA
Cucsa.359250.4
Homeodomain
47
103
KKRKNRHTSEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCKQIKFWFQNRRTQIKA
Links
Other
Homeodomain
family TFs
Other
Cucumis sativus
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla015702
Citrullus lanatus
Cla015702
N
0.863
Cla014693
Citrullus lanatus
Cla014693
I
0.708
Cucsa.045360
Cucumis sativus
Cucsa.045360
I
0.708
Carubv10022676m.g
Capsella rubella
Carubv10022676m.g
I
0.700
Si012707m.g
Setaria italica
Si012707m.g
N
0.700
Cagra.0352s0025
Capsella grandiflora
Cagra.0352s0025
I
0.700
Bostr.23794s0877
Boechera stricta
Bostr.23794s0877
I
0.685
Aquca_012_00126
Aquilegia coerulea
Aquca_012_00126
I
0.683
HDG3
Arabidopsis thaliana
AT2G32370
I
0.677
Bra008562
Brassica rapa
Bra008562
I
0.669
SapurV1A.0068s0140
Salix purpurea
SapurV1A.0068s0140
I
0.666
POPTR_0015s13340
Populus trichocarpa
POPTR_0015s13340
I
0.666
POPTR_0012s13390
Populus trichocarpa
POPTR_0012s13390
I
0.666
MTR_7g427700
Medicago truncatula
MTR_7g427700
N
0.663
MTR_7g427710
Medicago truncatula
MTR_7g427710
N
0.663
VIT_04s0079g00480
Vitis vinifera
VIT_04s0079g00480
I
0.650
AC235534.1_FG007
Zea mays
AC235534.1_FG007
I
0.636
Sb06g025750
Sorghum bicolor
Sb06g025750
N
0.617