Carubv10022677m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10022677m.g T228338_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANL2
M02046_2.00
Arabidopsis thaliana
NCATTWATKNN

NNMATWAATGN
PBM
Weirauch et al.(2014)
pTH8244
0.844 0.895
ANL2
M06919_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_col_a
0.844 0.895
ANL2
M06920_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
ANL2_colamp_a
0.844 0.895
HDG1
M06917_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_col100_a
0.841 0.930
HDG1
M06918_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG1_colamp_a
0.841 0.930
HDG7
M06931_2.00
Arabidopsis thaliana
DCATTAAWTRH

DYAWTTAATGH
Dap-seq
OMalley et al.(2016)
HDG7_col_a
0.807 0.754
HDG7
M10629_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG7_01
0.807 0.754
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH

DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.806 0.807
HDG11
M02039_2.00
Arabidopsis thaliana
DCATTWAWKD

HMWTWAATGH
PBM
Weirauch et al.(2014)
pTH7664
0.790 0.789
HDG11
M06904_2.00
Arabidopsis thaliana
DCATTWAWTRH

DYAWTWAATGH
Dap-seq
OMalley et al.(2016)
EDT1_col
0.790 0.789
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN

NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.788 0.789
PDF2
M10625_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.788 0.789
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN

NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.786 0.772
ATML1
M10626_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.786 0.772
HDG9
M10628_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HDG9_01
0.771 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022677m Homeodomain 94 150

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002369 Ricinus communis 29729.m002369 I 0.000
29729.m002370 Ricinus communis 29729.m002370 I 0.000
29915.m000479 Ricinus communis 29915.m000479 I 0.000
30190.m010814 Ricinus communis 30190.m010814 I 0.000
WRKY70 Arabidopsis thaliana AT3G56400 D 0.000
BGIOSGA001093 Oryza indica BGIOSGA001093 I 0.000
Bo2g109030 Brassica oleracea Bo2g109030 I 0.000
Bo6g066790 Brassica oleracea Bo6g066790 I 0.000
Bo6g071110 Brassica oleracea Bo6g071110 I 0.000
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I 0.000
Bostr.25463s0219 Boechera stricta Bostr.25463s0219 I 0.000
Bra033158 Brassica rapa Bra033158 I 0.000
BRADI2G15877 Brachypodium distachyon BRADI2G15877 I 0.000
BRADI2G45480 Brachypodium distachyon BRADI2G45480 I 0.000
Cagra.3839s0004 Capsella grandiflora Cagra.3839s0004 I 0.000
Carubv10001458m.g Capsella rubella Carubv10001458m.g I 0.000
Carubv10017349m.g Capsella rubella Carubv10017349m.g I 0.000
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.000
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.000
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I 0.000
cassava42820.valid.m1 Manihot esculenta cassava42820.valid.m1 I 0.000
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I 0.000
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I 0.000
Ciclev10005165m.g Citrus clementina Ciclev10005165m.g I 0.000
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.000
Ciclev10021038m.g Citrus clementina Ciclev10021038m.g I 0.000
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.000
Eucgr.E00850 Eucalyptus grandis Eucgr.E00850 I 0.000
evm.TU.supercontig_79.60 Carica papaya evm.TU.supercontig_79.60 I 0.000
F775_25856 Aegilops tauschii F775_25856 I 0.000
F775_27443 Aegilops tauschii F775_27443 I 0.000
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I 0.000
WRKY41 Arabidopsis lyrata fgenesh2_kg.6__3080__AT4G11070.1 I 0.000
gene32076-v1.0-hybrid Fragaria vesca gene32076-v1.0-hybrid I 0.000
GLYMA05G29921 Glycine max GLYMA05G29921 I 0.000
GLYMA05G36970 Glycine max GLYMA05G36970 I 0.000
GLYMA08G02580 Glycine max GLYMA08G02580 I 0.000
Gorai.004G134600 Gossypium raimondii Gorai.004G134600 I 0.000
Gorai.008G253300 Gossypium raimondii Gorai.008G253300 I 0.000
GRMZM2G063880 Zea mays GRMZM2G063880 I 0.000
GRMZM2G408462 Zea mays GRMZM2G408462 I 0.000
GRMZM2G411766 Zea mays GRMZM2G411766 I 0.000
LPERR01G21480 Leersia perrieri LPERR01G21480 I 0.000
LPERR05G22060 Leersia perrieri LPERR05G22060 I 0.000
Lus10001902.g Linum usitatissimum Lus10001902.g I 0.000
Lus10023099.g Linum usitatissimum Lus10023099.g I 0.000
Lus10032372.g Linum usitatissimum Lus10032372.g I 0.000
MDP0000175240 Malus domestica MDP0000175240 I 0.000
mgf006355m Mimulus guttatus mgf006355m I 0.000
mgf015087m Mimulus guttatus mgf015087m I 0.000
mgf026576m Mimulus guttatus mgf026576m I 0.000
MLOC_17779 Hordeum vulgare MLOC_17779 I 0.000
MLOC_44455 Hordeum vulgare MLOC_44455 I 0.000
MLOC_65699 Hordeum vulgare MLOC_65699 I 0.000
MLOC_79171 Hordeum vulgare MLOC_79171 I 0.000
OB0086G10030 Oryza brachyantha OB0086G10030 I 0.000
OB05G34020 Oryza brachyantha OB05G34020 I 0.000
OBART01G25160 Oryza barthii OBART01G25160 I 0.000
OBART05G26430 Oryza barthii OBART05G26430 I 0.000
OGLUM01G28930 Oryza glumaepatula OGLUM01G28930 I 0.000
OGLUM05G28080 Oryza glumaepatula OGLUM05G28080 I 0.000
OLONG_010067 Oryza longistaminata OLONG_010067 I 0.000
OMERI01G22920 Oryza meridionalis OMERI01G22920 I 0.000
OMERI03G30520 Oryza meridionalis OMERI03G30520 I 0.000
ONIVA01G28420 Oryza nivara ONIVA01G28420 I 0.000
ONIVA05G28480 Oryza nivara ONIVA05G28480 I 0.000
OPUNC01G25080 Oryza punctata OPUNC01G25080 I 0.000
OPUNC05G24020 Oryza punctata OPUNC05G24020 I 0.000
orange1.1g019737m.g Citrus sinensis orange1.1g019737m.g I 0.000
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.000
orange1.1g045032m.g Citrus sinensis orange1.1g045032m.g I 0.000
ORGLA01G0204900 Oryza glaberrima ORGLA01G0204900 I 0.000
ORGLA03G0413100 Oryza glaberrima ORGLA03G0413100 I 0.000
ORGLA05G0229200 Oryza glaberrima ORGLA05G0229200 I 0.000
ORUFI01G28020 Oryza rufipogon ORUFI01G28020 I 0.000
ORUFI05G28340 Oryza rufipogon ORUFI05G28340 I 0.000
OS01G0656400 Oryza sativa OS01G0656400 I 0.000
OS05G0571200 Oryza sativa OS05G0571200 I 0.000
Pavir.Ea02282 Panicum virgatum Pavir.Ea02282 I 0.000
Pavir.Eb01752 Panicum virgatum Pavir.Eb01752 I 0.000
Pavir.J01329 Panicum virgatum Pavir.J01329 I 0.000
Pavir.J03334 Panicum virgatum Pavir.J03334 I 0.000
PGSC0003DMG400005835 Solanum tuberosum PGSC0003DMG400005835 I 0.000
PGSC0003DMG400012160 Solanum tuberosum PGSC0003DMG400012160 I 0.000
PGSC0003DMG400017990 Solanum tuberosum PGSC0003DMG400017990 I 0.000
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.000
PGSC0003DMG400033884 Solanum tuberosum PGSC0003DMG400033884 N 0.000
PGSC0003DMG401033880 Solanum tuberosum PGSC0003DMG401033880 N 0.000
PGSC0003DMG402033880 Solanum tuberosum PGSC0003DMG402033880 N 0.000
PK03324.1 Cannabis sativa PK03324.1 I 0.000
Pm003015 Prunus mume Pm003015 I 0.000
POPTR_0001s10490 Populus trichocarpa POPTR_0001s10490 I 0.000
POPTR_0003s13840 Populus trichocarpa POPTR_0003s13840 I 0.000
POPTR_0006s10950 Populus trichocarpa POPTR_0006s10950 I 0.000
POPTR_0012s01380 Populus trichocarpa POPTR_0012s01380 I 0.000
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.000
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I 0.000
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.000
SapurV1A.0237s0250 Salix purpurea SapurV1A.0237s0250 I 0.000
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.000
SapurV1A.0377s0020 Salix purpurea SapurV1A.0377s0020 I 0.000
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.000
SapurV1A.1043s0030 Salix purpurea SapurV1A.1043s0030 I 0.000
Sb03g029920 Sorghum bicolor Sb03g029920 I 0.000
Sb09g029050 Sorghum bicolor Sb09g029050 I 0.000
Si002203m.g Setaria italica Si002203m.g I 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Si022843m.g Setaria italica Si022843m.g I 0.000
Solyc05g050340.2 Solanum lycopersicum Solyc05g050340.2 N 0.000
Solyc08g008280.2 Solanum lycopersicum Solyc08g008280.2 I 0.000
Solyc08g082110.2 Solanum lycopersicum Solyc08g082110.2 I 0.000
TCM_006116 Theobroma cacao TCM_006116 I 0.000
TCM_016426 Theobroma cacao TCM_016426 I 0.000
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I 0.000
TRAES3BF051200110CFD_g Triticum aestivum TRAES3BF051200110CFD_g I 0.000
Traes_1BL_73811B853 Triticum aestivum Traes_1BL_73811B853 I 0.000
Traes_3AL_6E92D4E1F Triticum aestivum Traes_3AL_6E92D4E1F I 0.000
TRIUR3_29889 Triticum urartu TRIUR3_29889 I 0.000
VIT_02s0025g01280 Vitis vinifera VIT_02s0025g01280 I 0.000