Gorai.004G195900 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.004G195900 T228705_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.832 0.877
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.832 0.877
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.824 0.807
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.803 0.860
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.803 0.860
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.803 0.860
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.793 0.860
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.793 0.860
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.793 0.860
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.773 0.684
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.773 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G195900.1 Homeodomain 140 196
Gorai.004G195900.2 Homeodomain 136 192

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_02688 Capronia coronata A1O1_02688 N 0.000
A1O3_05266 Capronia epimyces A1O3_05266 N 0.000
A1O5_01442 Cladophialophora psammophila A1O5_01442 N 0.000
A1O7_08334 Cladophialophora yegresii A1O7_08334 N 0.000
A1O9_10004 Exophiala aquamarina A1O9_10004 N 0.000
AB07208.1 Alternaria brassicicola AB07208.1 N 0.000
ACRE_022770 Acremonium chrysogenum ACRE_022770 N 0.000
ARB_01700 Arthroderma benhamiae ARB_01700 N 0.000
BAUCODRAFT_72261 Baudoinia compniacensis BAUCODRAFT_72261 N 0.000
BBA_02591 Beauveria bassiana BBA_02591 N 0.000
Bcin03g01100 Botrytis cinerea Bcin03g01100 N 0.000
BDDG_02330 Blastomyces dermatitidis BDDG_02330 N 0.000
ACLA_016070 Aspergillus clavatus CADACLAG00000861 N 0.000
CADAFLAG00009101 Aspergillus flavus CADAFLAG00009101 N 0.000
AFUA_5G13080 Aspergillus fumigatus CADAFUAG00006036 N 0.000
CADAORAG00011561 Aspergillus oryzae CADAORAG00011561 N 0.000
NFIA_073950 Neosartorya fischeri CADNFIAG00007563 N 0.000
CCM_03094 Cordyceps militaris CCM_03094 N 0.000
CFIO01_11426 Colletotrichum fioriniae CFIO01_11426 N 0.000
CGGC5_6062 Colletotrichum gloeosporioides CGGC5_6062 N 0.000
CH063_05999 Colletotrichum higginsianum CH063_05999 N 0.000
CHGG_02432 Chaetomium globosum CHGG_02432 N 0.000
CMQ_5876 Grosmannia clavigera CMQ_5876 N 0.000
Cob_11832 Colletotrichum orbiculare Cob_11832 N 0.000
CPC735_023090 Coccidioides posadasii CPC735_023090 N 0.000
CSUB01_00157 Colletotrichum sublineola CSUB01_00157 N 0.000
CTHT_0029190 Chaetomium thermophilum CTHT_0029190 N 0.000
EPUS_05767 Endocarpon pusillum EPUS_05767 N 0.000
estExt_Genewise1.C_11835 Neurospora discreta estExt_Genewise1.C_11835 N 0.000
EURHEDRAFT_416038 Aspergillus ruber EURHEDRAFT_416038 N 0.000
e_gw1.00710.35.1 Aspergillus carbonarius e_gw1.00710.35.1 N 0.000
e_gw1.1.3574.1 Cryphonectria parasitica e_gw1.1.3574.1 N 0.000
F503_00183 Ophiostoma piceae uamh F503_00183 N 0.000
G647_07293 Cladophialophora carrionii G647_07293 N 0.000
GGTG_02625 Gaeumannomyces graminis GGTG_02625 N 0.000
GLRG_03112 Colletotrichum graminicola GLRG_03112 N 0.000
GSTUM_00005836001 Tuber melanosporum GSTUM_00005836001 N 0.000
H101_00462 Trichophyton interdigitale H101_00462 N 0.000
H102_08872 Trichophyton rubrum H102_08872 N 0.000
H105_08898 Trichophyton soudanense H105_08898 N 0.000
HCBG_06294 Histoplasma capsulatum HCBG_06294 N 0.000
HMPREF1624_04517 Sporothrix schenckii HMPREF1624_04517 N 0.000
M437DRAFT_47906 Aureobasidium melanogenum M437DRAFT_47906 N 0.000
MAC_02105 Metarhizium acridum MAC_02105 N 0.000
MAJ_05489 Metarhizium majus MAJ_05489 N 0.000
MAM_02243 Metarhizium album MAM_02243 N 0.000
MANI_002092 Metarhizium anisopliae MANI_002092 N 0.000
MBM_07053 Marssonina brunnea MBM_07053 N 0.000
MBR_07319 Metarhizium brunneum MBR_07319 N 0.000
MGG_07458 Magnaporthe oryzae MGG_07458 N 0.000
MGU_05987 Metarhizium guizhouense MGU_05987 N 0.000
MPH_00903 Macrophomina phaseolina MPH_00903 N 0.000
MYCTH_2301100 Myceliophthora thermophila MYCTH_2301100 N 0.000
NCU09529 Neurospora crassa NCU09529 N 0.000
NEUTE1DRAFT_75753 Neurospora tetrasperma NEUTE1DRAFT_75753 N 0.000
OCS_02045 Ophiocordyceps sinensis OCS_02045 N 0.000
Pc21g08180 Penicillium chrysogenum Pc21g08180 N 0.000
PCH_Pc21g08180 Penicillium rubens PCH_Pc21g08180 N 0.000
PDE_07378 Penicillium oxalicum PDE_07378 N 0.000
PDIP_58830 Penicillium digitatum PDIP_58830 N 0.000
PODANS_2_8520 Podospora anserina PODANS_2_8520 N 0.000
PV04_08874 Capronia semiimmersa PV04_08874 N 0.000
PV06_05084 Exophiala oligosperma PV06_05084 N 0.000
PV07_00953 Cladophialophora immunda PV07_00953 N 0.000
PV08_09110 Exophiala spinifera PV08_09110 N 0.000
PV09_02763 Verruconis gallopava PV09_02763 N 0.000
PV11_02440 Exophiala sideris PV11_02440 N 0.000
PVAR5_1770 Byssochlamys spectabilis PVAR5_1770 N 0.000
S40285_01658 Stachybotrys chlorohalonata S40285_01658 N 0.000
S40288_00446 Stachybotrys chartarum S40288_00446 N 0.000
SBOR_3507 Sclerotinia borealis SBOR_3507 N 0.000
SEPMUDRAFT_17793 Sphaerulina musiva SEPMUDRAFT_17793 N 0.000
SPBR_05600 Sporothrix brasiliensis SPBR_05600 N 0.000
SS1G_00787 Sclerotinia sclerotiorum SS1G_00787 N 0.000
TEQG_08764 Trichophyton equinum TEQG_08764 N 0.000
TESG_03160 Trichophyton tonsurans TESG_03160 N 0.000
THITE_2107310 Thielavia terrestris THITE_2107310 N 0.000
TRIATDRAFT_321925 Trichoderma atroviride TRIATDRAFT_321925 N 0.000
TRIREDRAFT_3449 Trichoderma reesei TRIREDRAFT_3449 N 0.000
TRIVIDRAFT_229241 Trichoderma virens TRIVIDRAFT_229241 N 0.000
TRV_03395 Trichophyton verrucosum TRV_03395 N 0.000
U727_0043104031 Penicillium solitum U727_0043104031 N 0.000
UREG_04680 Uncinocarpus reesii UREG_04680 N 0.000
VHEMI00945 Torrubiella hemipterigena VHEMI00945 N 0.000
X797_006673 Metarhizium robertsii X797_006673 N 0.000
Z517_05121 Fonsecaea pedrosoi Z517_05121 N 0.000
Z518_05219 Rhinocladiella mackenziei Z518_05219 N 0.000
Z519_11826 Cladophialophora bantiana Z519_11826 N 0.000