CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G155100
(
Gossypium raimondii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Gorai.008G155100
T228753_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN
NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.668
0.772
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G155100.1
Homeodomain
27
83
KVKRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK
Gorai.008G155100.2
Homeodomain
27
83
KVKRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK
Gorai.008G155100.3
Homeodomain
27
83
KVKRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK
Gorai.008G155100.4
Homeodomain
27
83
KVKRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK
Links
Other
Homeodomain
family TFs
Other
Gossypium raimondii
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy