Gorai.009G214200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G214200 T228776_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA

TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.761 0.750
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW

WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.761 0.750
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G214200.1 Homeodomain 77 137
Gorai.009G214200.2 Homeodomain 77 137

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

443 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30131.m007045 Ricinus communis 30131.m007045 I 0.000
30170.m013667 Ricinus communis 30170.m013667 I 0.000
Al_scaffold_0001_968 Arabidopsis lyrata Al_scaffold_0001_968 I 0.000
Al_scaffold_0003_2564 Arabidopsis lyrata Al_scaffold_0003_2564 I 0.000
AMTR_s00011p00241810 Amborella trichopoda AMTR_s00011p00241810 I 0.000
AMTR_s00022p00231410 Amborella trichopoda AMTR_s00022p00231410 I 0.000
Aquca_006_00058 Aquilegia coerulea Aquca_006_00058 I 0.000
Aquca_007_00236 Aquilegia coerulea Aquca_007_00236 I 0.000
BHLH74 Arabidopsis thaliana AT1G10120 D 0.000
BHLH48 Arabidopsis thaliana AT2G42300 I 0.000
BHLH77 Arabidopsis thaliana AT3G23690 D 0.000
BHLH60 Arabidopsis thaliana AT3G57800 I 0.000
BHLH63 Arabidopsis thaliana AT4G34530 I 0.000
BGIOSGA011172 Oryza indica BGIOSGA011172 I 0.000
Bo1g007200 Brassica oleracea Bo1g007200 I 0.000
Bo1g101470 Brassica oleracea Bo1g101470 I 0.000
Bo4g015870 Brassica oleracea Bo4g015870 I 0.000
Bo6g056130 Brassica oleracea Bo6g056130 I 0.000
Bo6g073190 Brassica oleracea Bo6g073190 I 0.000
Bo7g039150 Brassica oleracea Bo7g039150 I 0.000
Bo8g059100 Brassica oleracea Bo8g059100 I 0.000
Bo8g092230 Brassica oleracea Bo8g092230 I 0.000
Bo8g110780 Brassica oleracea Bo8g110780 I 0.000
Bostr.13671s0476 Boechera stricta Bostr.13671s0476 I 0.000
Bostr.19424s0266 Boechera stricta Bostr.19424s0266 I 0.000
Bostr.20903s0035 Boechera stricta Bostr.20903s0035 I 0.000
Bostr.25993s0549 Boechera stricta Bostr.25993s0549 I 0.000
Bostr.7867s1312 Boechera stricta Bostr.7867s1312 I 0.000
Bra003300 Brassica rapa Bra003300 I 0.000
Bra004679 Brassica rapa Bra004679 I 0.000
Bra007358 Brassica rapa Bra007358 I 0.000
Bra011540 Brassica rapa Bra011540 I 0.000
Bra014603 Brassica rapa Bra014603 I 0.000
Bra014972 Brassica rapa Bra014972 I 0.000
Bra018461 Brassica rapa Bra018461 I 0.000
Bra019962 Brassica rapa Bra019962 I 0.000
Bra028335 Brassica rapa Bra028335 I 0.000
Bra031700 Brassica rapa Bra031700 I 0.000
Bra037059 Brassica rapa Bra037059 I 0.000
BRADI1G69190 Brachypodium distachyon BRADI1G69190 I 0.000
Cagra.0026s0060 Capsella grandiflora Cagra.0026s0060 I 0.000
Cagra.0210s0018 Capsella grandiflora Cagra.0210s0018 I 0.000
Cagra.2350s0001 Capsella grandiflora Cagra.2350s0001 I 0.000
Cagra.2636s0014 Capsella grandiflora Cagra.2636s0014 I 0.000
Cagra.4395s0200 Capsella grandiflora Cagra.4395s0200 I 0.000
Carubv10005062m.g Capsella rubella Carubv10005062m.g I 0.000
Carubv10009514m.g Capsella rubella Carubv10009514m.g I 0.000
Carubv10013979m.g Capsella rubella Carubv10013979m.g I 0.000
Carubv10018503m.g Capsella rubella Carubv10018503m.g I 0.000
Carubv10023618m.g Capsella rubella Carubv10023618m.g I 0.000
cassava19301.valid.m1 Manihot esculenta cassava19301.valid.m1 I 0.000
cassava21207.m1 Manihot esculenta cassava21207.m1 I 0.000
cassava22408.valid.m1 Manihot esculenta cassava22408.valid.m1 I 0.000
cassava35620.valid.m1 Manihot esculenta cassava35620.valid.m1 I 0.000
cassava38223.valid.m1 Manihot esculenta cassava38223.valid.m1 I 0.000
cassava39250.m1 Manihot esculenta cassava39250.m1 I 0.000
Ca_04778 Cicer arietinum Ca_04778 I 0.000
Ca_09212 Cicer arietinum Ca_09212 I 0.000
chr1.CM0178.420.nc Lotus japonicus chr1.CM0178.420.nc I 0.000
chr1.CM0318.90.nd Lotus japonicus chr1.CM0318.90.nd I 0.000
Ciclev10001249m.g Citrus clementina Ciclev10001249m.g I 0.000
Ciclev10005087m.g Citrus clementina Ciclev10005087m.g I 0.000
Ciclev10028494m.g Citrus clementina Ciclev10028494m.g I 0.000
Cla010130 Citrullus lanatus Cla010130 I 0.000
Cla016164 Citrullus lanatus Cla016164 I 0.000
Cla017790 Citrullus lanatus Cla017790 I 0.000
Cucsa.242940 Cucumis sativus Cucsa.242940 I 0.000
Cucsa.353050 Cucumis sativus Cucsa.353050 I 0.000
Cucsa.377700 Cucumis sativus Cucsa.377700 I 0.000
Eucgr.A02413 Eucalyptus grandis Eucgr.A02413 I 0.000
Eucgr.F00100 Eucalyptus grandis Eucgr.F00100 I 0.000
Eucgr.F02220 Eucalyptus grandis Eucgr.F02220 I 0.000
Eucgr.I01279 Eucalyptus grandis Eucgr.I01279 I 0.000
evm.TU.supercontig_160.32 Carica papaya evm.TU.supercontig_160.32 I 0.000
evm.TU.supercontig_6.130 Carica papaya evm.TU.supercontig_6.130 I 0.000
evm.TU.supercontig_62.160 Carica papaya evm.TU.supercontig_62.160 I 0.000
evm.TU.supercontig_85.120 Carica papaya evm.TU.supercontig_85.120 I 0.000
fgenesh2_kg.4__2381__AT2G42300.1 Arabidopsis lyrata fgenesh2_kg.4__2381__AT2G42300.1 I 0.000
CIB1 Arabidopsis lyrata fgenesh2_kg.7__638__AT4G34530.1 I 0.000
gene02629-v1.0-hybrid Fragaria vesca gene02629-v1.0-hybrid I 0.000
gene25273-v1.0-hybrid Fragaria vesca gene25273-v1.0-hybrid I 0.000
GLYMA0041S00210 Glycine max GLYMA0041S00210 I 0.000
GLYMA03G29710 Glycine max GLYMA03G29710 I 0.000
GLYMA06G05181 Glycine max GLYMA06G05181 I 0.000
GLYMA14G10180 Glycine max GLYMA14G10180 I 0.000
GLYMA19G32570 Glycine max GLYMA19G32570 I 0.000
Gorai.002G229100 Gossypium raimondii Gorai.002G229100 I 0.000
Gorai.007G361700 Gossypium raimondii Gorai.007G361700 I 0.000
Gorai.008G029300 Gossypium raimondii Gorai.008G029300 I 0.000
Gorai.010G028200 Gossypium raimondii Gorai.010G028200 I 0.000
Gorai.012G031100 Gossypium raimondii Gorai.012G031100 I 0.000
Gorai.013G036400 Gossypium raimondii Gorai.013G036400 I 0.000
GRMZM2G180452 Zea mays GRMZM2G180452 I 0.000
GRMZM2G407119 Zea mays GRMZM2G407119 I 0.000
GSMUA_Achr1G19610_001 Musa acuminata GSMUA_Achr1G19610_001 I 0.000
GSMUA_Achr3G17290_001 Musa acuminata GSMUA_Achr3G17290_001 I 0.000
GSMUA_Achr4G19330_001 Musa acuminata GSMUA_Achr4G19330_001 I 0.000
GSMUA_Achr7G06330_001 Musa acuminata GSMUA_Achr7G06330_001 I 0.000
gw1.270.82.1 Physcomitrella patens gw1.270.82.1 D 0.000
gw1.28.196.1 Physcomitrella patens gw1.28.196.1 I 0.000
LPERR03G08460 Leersia perrieri LPERR03G08460 I 0.000
Lus10006491.g Linum usitatissimum Lus10006491.g I 0.000
Lus10011307.g Linum usitatissimum Lus10011307.g I 0.000
Lus10012484.g Linum usitatissimum Lus10012484.g I 0.000
Lus10014300.g Linum usitatissimum Lus10014300.g I 0.000
Lus10023562.g Linum usitatissimum Lus10023562.g I 0.000
Lus10026008.g Linum usitatissimum Lus10026008.g I 0.000
Lus10040448.g Linum usitatissimum Lus10040448.g I 0.000
Lus10040506.g Linum usitatissimum Lus10040506.g I 0.000
MDP0000183819 Malus domestica MDP0000183819 I 0.000
MDP0000200355 Malus domestica MDP0000200355 I 0.000
MDP0000231650 Malus domestica MDP0000231650 I 0.000
MDP0000248312 Malus domestica MDP0000248312 I 0.000
MDP0000313643 Malus domestica MDP0000313643 I 0.000
mgf008724m Mimulus guttatus mgf008724m I 0.000
mgf013162m Mimulus guttatus mgf013162m I 0.000
mgf016406m Mimulus guttatus mgf016406m I 0.000
MLOC_64018 Hordeum vulgare MLOC_64018 I 0.000
MTR_1g017350 Medicago truncatula MTR_1g017350 I 0.000
MTR_3g116770 Medicago truncatula MTR_3g116770 I 0.000
MTR_7g092510 Medicago truncatula MTR_7g092510 I 0.000
OB03G19600 Oryza brachyantha OB03G19600 I 0.000
OBART03G09470 Oryza barthii OBART03G09470 I 0.000
OGLUM03G09560 Oryza glumaepatula OGLUM03G09560 I 0.000
OLONG_023701 Oryza longistaminata OLONG_023701 I 0.000
OMERI03G08820 Oryza meridionalis OMERI03G08820 I 0.000
ONIVA02G39130 Oryza nivara ONIVA02G39130 I 0.000
OPUNC03G09060 Oryza punctata OPUNC03G09060 I 0.000
orange1.1g014374m.g Citrus sinensis orange1.1g014374m.g I 0.000
orange1.1g015330m.g Citrus sinensis orange1.1g015330m.g I 0.000
orange1.1g022116m.g Citrus sinensis orange1.1g022116m.g I 0.000
ORGLA03G0090200 Oryza glaberrima ORGLA03G0090200 I 0.000
ORUFI03G09600 Oryza rufipogon ORUFI03G09600 I 0.000
OS03G0231950 Oryza sativa OS03G0231950 I 0.000
Pavir.Ib00947 Panicum virgatum Pavir.Ib00947 I 0.000
Pavir.J05268 Panicum virgatum Pavir.J05268 I 0.000
PDK_20s1612611g001 Phoenix dactylifera PDK_20s1612611g001 I 0.000
PGSC0003DMG400000711 Solanum tuberosum PGSC0003DMG400000711 I 0.000
PGSC0003DMG400008183 Solanum tuberosum PGSC0003DMG400008183 I 0.000
PK05923.1 Cannabis sativa PK05923.1 D 0.000
PK12518.1 Cannabis sativa PK12518.1 I 0.000
PK16670.1 Cannabis sativa PK16670.1 I 0.000
Pm005441 Prunus mume Pm005441 I 0.000
Pm007208 Prunus mume Pm007208 I 0.000
Pm021763 Prunus mume Pm021763 I 0.000
POPTR_0002s11540 Populus trichocarpa POPTR_0002s11540 I 0.000
POPTR_0003s16300 Populus trichocarpa POPTR_0003s16300 I 0.000
POPTR_0004s16330 Populus trichocarpa POPTR_0004s16330 I 0.000
POPTR_0005s12370 Populus trichocarpa POPTR_0005s12370 I 0.000
POPTR_0005s19020 Populus trichocarpa POPTR_0005s19020 I 0.000
POPTR_0007s13020 Populus trichocarpa POPTR_0007s13020 I 0.000
POPTR_0009s12000 Populus trichocarpa POPTR_0009s12000 I 0.000
PRUPE_ppa005829mg Prunus persica PRUPE_ppa005829mg I 0.000
PRUPE_ppa007762mg Prunus persica PRUPE_ppa007762mg I 0.000
PRUPE_ppa007919mg Prunus persica PRUPE_ppa007919mg I 0.000
PRUPE_ppa025527mg Prunus persica PRUPE_ppa025527mg I 0.000
SapurV1A.0004s0280 Salix purpurea SapurV1A.0004s0280 I 0.000
SapurV1A.0037s0530 Salix purpurea SapurV1A.0037s0530 I 0.000
SapurV1A.0336s0050 Salix purpurea SapurV1A.0336s0050 I 0.000
SapurV1A.0340s0220 Salix purpurea SapurV1A.0340s0220 I 0.000
SapurV1A.0721s0010 Salix purpurea SapurV1A.0721s0010 I 0.000
SapurV1A.1110s0020 Salix purpurea SapurV1A.1110s0020 N 0.000
Sb01g042070 Sorghum bicolor Sb01g042070 I 0.000
scaffold_101064.1 Arabidopsis lyrata scaffold_101064.1 I 0.000
Si039620m.g Setaria italica Si039620m.g I 0.000
Solyc01g109700.2 Solanum lycopersicum Solyc01g109700.2 I 0.000
Solyc10g079070.1 Solanum lycopersicum Solyc10g079070.1 I 0.000
TCM_000362 Theobroma cacao TCM_000362 I 0.000
TCM_006871 Theobroma cacao TCM_006871 I 0.000
TCM_024828 Theobroma cacao TCM_024828 I 0.000
TCM_034649 Theobroma cacao TCM_034649 I 0.000
Thhalv10002586m.g Eutrema salsugineum Thhalv10002586m.g I 0.000
Thhalv10006040m.g Eutrema salsugineum Thhalv10006040m.g I 0.000
Thhalv10008002m.g Eutrema salsugineum Thhalv10008002m.g I 0.000
Thhalv10025748m.g Eutrema salsugineum Thhalv10025748m.g I 0.000
Thhalv10025750m.g Eutrema salsugineum Thhalv10025750m.g I 0.000
Traes_4AS_DD5072A70 Triticum aestivum Traes_4AS_DD5072A70 I 0.000
Traes_4BL_83F647CBE Triticum aestivum Traes_4BL_83F647CBE I 0.000
Traes_4DL_29A136781 Triticum aestivum Traes_4DL_29A136781 I 0.000
CIB1 Vitis vinifera VIT_03s0038g04760 I 0.000
VIT_04s0023g01930 Vitis vinifera VIT_04s0023g01930 I 0.000
VIT_08s0007g07870 Vitis vinifera VIT_08s0007g07870 I 0.000
VIT_18s0001g08600 Vitis vinifera VIT_18s0001g08600 I 0.000