CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.012G055400
(
Gossypium raimondii
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Gorai.012G055400
T228807_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.786
0.857
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.786
0.857
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.766
0.875
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.766
0.875
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.644
0.804
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.644
0.804
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.635
0.571
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.635
0.571
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.635
0.571
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.633
0.589
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.617
0.732
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.600
0.750
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.600
0.750
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.600
0.750
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.600
0.750
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.012G055400.1
Homeodomain
84
139
EKKKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWKT
Gorai.012G055400.2
Homeodomain
57
112
EKKKRLKLEQVKALEKSFESGNKLEPQRKLQLAKALGLKPRQIAIWFQNRRVRWKT
Links
Other
Homeodomain
family TFs
Other
Gossypium raimondii
TFs
411 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy